CK938798

Overview
NameCK938798
Unique NameCK938798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:71..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 82/177 (46.33%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  104 TDSR-EILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            TD R E+L+S F +  +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW      KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++++  GKP DKPN++ G  VQ+CW KFARY++VEL+E+ +
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM 182          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.423e-41
Identity = 81/177 (45.76%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  104 TDSR-EILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            TD R E+L+S F +  +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW      KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++++  GKP +KPN++ G  VQ+CW KFARY++VEL+E+ +
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPM 182          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 8.681e-38
Identity = 75/185 (40.54%), Postives = 117/185 (63.24%), Query Frame = 2
Query:   83 MVISTTETDSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYD--KPNIITGANVQVCWEKFARYFEVELKEVKL 631
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+M PE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN++  +  QVCWEKF  Y+++E++EV +
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPM 183          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.681e-38
Identity = 75/185 (40.54%), Postives = 117/185 (63.24%), Query Frame = 2
Query:   83 MVISTTETDSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYD--KPNIITGANVQVCWEKFARYFEVELKEVKL 631
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+M PE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN++  +  QVCWEKF  Y+++E++EV +
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPM 183          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.299e-37
Identity = 77/183 (42.08%), Postives = 117/183 (63.93%), Query Frame = 2
Query:   83 MVISTTETDSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            M +   +T+  +    ++AS      I ++ + + S   E    +I DEL+LDGN + NLA+F  T +  E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P  +    +G  T GSSEA ML G+A K +W++  K+QGKP+DKPNI+TG  VQ+CW KFA YF++EL+EV +
Sbjct:    1 MSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP--ESSETIGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPM 180          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.764e-36
Identity = 73/175 (41.71%), Postives = 108/175 (61.71%), Query Frame = 2
Query:  107 DSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            D  + L   +        I +FK+ D+    E   ++I DEL+LDGN + NLA+F  T +      ++   I+KN +D DEYP + E++NRC++++A L+N P  D    +G  T GSSEA ML GLA K  W++  K+ G PYDKPNI+TG  VQ+CW KFA YF++E++E+ +
Sbjct:    7 DKHKSLYDNYVQSATTEEIAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPM 178          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.879e-35
Identity = 72/153 (47.06%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  167 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEV 625
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL  RC++M+A L++     D+  +G  T GSSEAIML GLA K++W+ ++K  GK   KPNII  +  QV  EKF RYFEVE + V
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLV 209          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.930e-33
Identity = 70/168 (41.67%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  134 FASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYD--KPNIITGANVQVCWEKFARYFEVELKEVKL 631
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+M  E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   D + +G  TVGSSEA ML GLA K +W+   +++G      +PN+I  +  QVCWEKF  Y++V+++ V +
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KDMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPM 184          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.434e-32
Identity = 69/168 (41.07%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  134 FASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYD--KPNIITGANVQVCWEKFARYFEVELKEVKL 631
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+M  E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   + + +G  TVGSSEA ML GLA K +W+   +++G      +PN+I  +  QVCWEKF  Y++V+++ V +
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KEMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPM 184          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.533e-31
Identity = 66/180 (36.67%), Postives = 108/180 (60.00%), Query Frame = 2
Query:   98 TETDSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPY--DKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+M  E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN++  +  QVCWEKF  Y++++++ V +
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPM 181          
The following BLAST results are available for this feature:
BLAST of CK938798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECO571.690e-4146.33Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL66.423e-4145.76Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCE_LACLM8.681e-3840.54Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA8.681e-3840.54Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
GADA_DICDI3.299e-3742.08Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
GADB_DICDI4.764e-3641.71Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCE_YEAST6.879e-3547.06Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEC_LISMO4.930e-3341.67Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISIN1.434e-3241.07Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN3.533e-3136.67Glutamate decarboxylase beta OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_A11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938798 ID=CK938798; Name=CK938798; organism=Citrus sinensis; type=EST; length=632bp
TCTTTCCTTTGTATCTCAGCAATTTCTATTCATTTCTCTCATACTCAAGA
GTCTCTCTTCTCTGCACAAAACAAAAACAAAAATGGTGATTTCAACGACA
GAAACAGACTCCAGGGAGATTTTGAACTCCACATTTGCCTCNNNATATGT
CCGTGCTGCTATTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAAGG
AGGCAGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCA
AGGCTGAACTTGGCATCTTTTGTGACCACTTGGATGGGGCCCGAGTGTGA
TAAGCTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGAAT
ACCCTGTAACCACAGAGCTCCAAAATCGGTGTGTGAATATGATTGCCCAC
CTATTTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGAC
TGTAGGTTCATCAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGA
AGTGGCAGCAGAAGATAAAAGAGCAAGGCAAACCCTATGATAAGCCCAAT
ATAATCACTGGAGCTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTA
CTTTGAGGTTGAGCTGAAGGAAGTGAAACTGG
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