CK938798

Overview
NameCK938798
Unique NameCK938798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.026e-31
Identity = 66/180 (36.67%), Postives = 108/180 (60.00%), Query Frame = 2
Query:   98 TETDSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPY--DKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+M  E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN++  +  QVCWEKF  Y++++++ V +
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPM 181          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30
Identity = 63/159 (39.62%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  161 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPY--DKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+M PE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP+++  +  QVCWEKF  Y+++EL+EV +
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPM 179          
The following BLAST results are available for this feature:
BLAST of CK938798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO6.026e-3136.67Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO8.702e-3039.62Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_A11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938798 ID=CK938798; Name=CK938798; organism=Citrus sinensis; type=EST; length=632bp
TCTTTCCTTTGTATCTCAGCAATTTCTATTCATTTCTCTCATACTCAAGA
GTCTCTCTTCTCTGCACAAAACAAAAACAAAAATGGTGATTTCAACGACA
GAAACAGACTCCAGGGAGATTTTGAACTCCACATTTGCCTCNNNATATGT
CCGTGCTGCTATTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAAGG
AGGCAGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCA
AGGCTGAACTTGGCATCTTTTGTGACCACTTGGATGGGGCCCGAGTGTGA
TAAGCTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGAAT
ACCCTGTAACCACAGAGCTCCAAAATCGGTGTGTGAATATGATTGCCCAC
CTATTTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGAC
TGTAGGTTCATCAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGA
AGTGGCAGCAGAAGATAAAAGAGCAAGGCAAACCCTATGATAAGCCCAAT
ATAATCACTGGAGCTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTA
CTTTGAGGTTGAGCTGAAGGAAGTGAAACTGG
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