CN187847

Overview
NameCN187847
Unique NameCN187847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187847_ssr47 microsatellite CN187847_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2623 contig Csv1_Contig2623:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_DROME (Mediator of RNA polymerase II transcription subunit 10 OS=Drosophila melanogaster GN=MED10 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:  244 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL-SEKCNIQVPMEVL-NLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 579
            + Q+ + VS F    Q  L Q++NSLV+ L  + KL S+  ++ VP EV  + ID  KNP  +T+D +   +AKN+  KGK +  K  + +LL EL +TFP+E+  YR  R +S
Sbjct:   19 VRQIRIIVSDFQPQGQNVLNQKINSLVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEGLKKFKTNLLLELYKTFPNEMNNYRAYRKDS 132
[Close]
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_DICDI (Putative mediator of RNA polymerase II transcription subunit 10 OS=Dictyostelium discoideum GN=med10 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 32/124 (25.81%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  193 KQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYR 561
            KQ    ++ +V++ +  L +  + V  F   SQ  L  +LN +++  + +       N +++P+E+  +ID  KNPD + ++ + +C++ N+ TKGK ++ K+ +K L   + ++F  E   Y+
Sbjct:   48 KQEHLPLLQTVEELVEELRRSLIVVEEFQTPSQQLLFDKLNKIINLYEKIESNRHIVNDVEIPLEIFRVIDQSKNPDLYVKETLQNCLSANEKTKGKIESIKNFKKELESHISESFASEYAEYK 171
The following BLAST results are available for this feature:
BLAST of CN187847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MED10_DROME2.299e-1439.47Mediator of RNA polymerase II transcription subuni... [more]
MED10_DICDI6.262e-1225.81Putative mediator of RNA polymerase II transcripti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187847 ID=CN187847; Name=CN187847; organism=Citrus sinensis; type=EST; length=729bp
AGTACCCGGTCTTCTAAATAGCGATTCGCAGAAGTTTTGGGGTCCTGAAG
AAGAAGAAAACTGTAATTACAGTTTCCTGATACGAGAGAAAGAAAGATGG
ATGGACCGGTGGGGGGCAGCAGAGCAAGTGGTGGCAATGGAATGGTGAGC
AATCAAGCAAACGATACAACAACTGTGGCAGCTGACGATCCGAAGCAGAA
CTTGAACCAGGTTATTAATTCAGTTCAGAAGACTCTTGGGCTCCTACATC
AACTCTACCTTACCGTATCTTCCTTCAATGCTGCCTCCCAGCTCCCTCTC
CTACAAAGACTCAATTCTCTTGTTTCGGAGCTTGACAACATGGTTAAGTT
GTCTGAGAAGTGCAATATTCAAGTGCCCATGGAAGTGCTTAATTTGATTG
ATGACGGAAAAAATCCTGATGAATTCACAAGGGATGTTATAAACAGCTGC
ATTGCTAAAAACCAAGTCACCAAAGGAAAAACTGATGCTTTCAAGAGTTT
ACGTAAGCATCTTTTGGACGAACTTGAGCAGACATTTCCGGATGAAGTTG
AAGCATATAGAGAGATACGTGCAAATTCTGCTGCTGAAGCAAAGCGTCTT
GCTCAATCACAAAGTATGTTGCCAAATGGAGATGTGAAAGTTAAATCTGA
GCTTTAAATGTCCCATTTCATGCAGAGTGTTGGGGCTCTTTCGACTACTA
CTTTTCTCAATGTAATGTCATGAGTCGTT
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