CN187847
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_AEDAE (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19 Identity = 45/129 (34.88%), Postives = 78/129 (60.47%), Query Frame = 1 Query: 190 PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 576 P +NL N ++ + + Q+ + VS F Q L Q++ SLV+ L + KL + ++ VP+EV + ID G+NP +T+D I+ + KN+ KGK D+++ + +L+ EL++TFP E+ Y+ IR + Sbjct: 4 PLENLE---NHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYKAIRGD 129
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_ANOGA (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18 Identity = 45/129 (34.88%), Postives = 77/129 (59.69%), Query Frame = 1 Query: 190 PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 576 P +NL N ++ + + Q+ + VS F Q L Q++ SLV+ L + KL + ++ VP+EV + ID G+NP +T+D I+ + KN+ KGK D+++ + +L+ EL +TFP E+ Y+ IR + Sbjct: 4 PLENLE---NHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYKAIRGD 129
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_MOUSE (Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16 Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 1 Query: 223 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 570 ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I VP+EV ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++ YR IR Sbjct: 12 LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_PONAB (Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16 Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 1 Query: 223 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 570 ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I VP+EV ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++ YR IR Sbjct: 12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_HUMAN (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16 Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 1 Query: 223 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 570 ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I VP+EV ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++ YR IR Sbjct: 12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_BOVIN (Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16 Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 1 Query: 223 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 570 ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I VP+EV ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++ YR IR Sbjct: 12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_XENTR (Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16 Identity = 43/117 (36.75%), Postives = 72/117 (61.54%), Query Frame = 1 Query: 223 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 570 ++K + + QL + VS F +SQ L Q+LN LV+ L ++ K ++ + I VP+EV + ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++ Y+ IR Sbjct: 12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVFPEDMAKYKAIR 128
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_XENLA (Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15 Identity = 42/126 (33.33%), Postives = 75/126 (59.52%), Query Frame = 1 Query: 196 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 570 + + + + ++K + + QL + VS F +SQ L Q+LN LV L ++ K ++ + I VP+EV + ID G+NP +T++ + +AKN+ KGK D K + L+ EL + FP+++ Y+ +R Sbjct: 3 EKFDNLEDHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVRGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVFPEDMAKYKAVR 128
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_MACFA (Mediator of RNA polymerase II transcription subunit 10 OS=Macaca fascicularis GN=MED10 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15 Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1 Query: 223 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 570 ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I VP+EV ID G+NP +T++ + +AKN+ KGK D K + L+ L + FP+++ YR IR Sbjct: 12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQGLSKVFPEDMAKYRSIR 128
BLAST of CN187847 vs. ExPASy Swiss-Prot
Match: MED10_DANRE (Mediator of RNA polymerase II transcription subunit 10 OS=Danio rerio GN=med10 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14 Identity = 40/119 (33.61%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 223 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 576 ++K + + QL + VS F +SQ L Q+LN +++ L ++ K ++ + I VP+EV ID G+NP +T++ + +AKN+ KGK D + L+ EL + FP+E+ Y+ I + Sbjct: 12 LEKFVENIRQLGIIVSDFQPSSQTGLNQKLNFMITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLTKFKSLLISELGKVFPEEMAKYKAIHGD 130 The following BLAST results are available for this feature:
BLAST of CN187847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187847 ID=CN187847; Name=CN187847; organism=Citrus sinensis; type=EST; length=729bpback to top |