CN187836

Overview
NameCN187836
Unique NameCN187836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: DNA2_YEAST (DNA replication ATP-dependent helicase DNA2 OS=Saccharomyces cerevisiae GN=DNA2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = -3
Query:  413 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNT-LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 781
            C + ++ +   +  N GEAE+ +  V  ++ +GV    I V + Y AQ++LL++  ++     G+E+ T D FQGR+   +IISMVR N+ L     L + RR+NVA+TRA   + ++   STI
Sbjct: 1323 CPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNK-NVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSKLIIIGSKSTI 1445          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: DNA2L_MOUSE (DNA2-like helicase OS=Mus musculus GN=Dna2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  422 GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVVCDS 751
            G   N  EA ++V    + I AG SPS I V +PY  Q++++ + L        VEV T+D +QGR+   +++S VRSN  G +G  L D RR+NVA+TRA KH  ++  S
Sbjct:  910 GGVSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLAR-SSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVALTRA-KHKLILLGS 1018          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: DNA2_SCHPO (DNA replication ATP-dependent helicase dna2 OS=Schizosaccharomyces pombe GN=dna2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = -3
Query:  380 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 739
            N  EA ++   V S +  GV  S+I + S Y +QV+LL + L    E   +E+ T+D +QGR+ D ++IS VRSN+   VG  L D  R+NVA++RA     +    ST+  +  ++ LL+
Sbjct: 1215 NHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKSFTE---IEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLLK 1332          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii GN=MJ0104 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  431 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 748
            S+YN  EAE V+  V  L+   +  + I   +PY AQV+ LR   +E      +EV T+D FQGRE +A++IS VR+      GFL D RR+NVAITRA + + ++
Sbjct:  533 SYYNIEEAEKVLEIVKKLVKYKIPTNVI---TPYDAQVRYLRRLFEE--HNIDIEVNTVDGFQGRENEAIVISFVRTKNF---GFLKDLRRLNVAITRAKRKLILI 630          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: Y4399_DICDI (Probable helicase DDB_G0274399 OS=Dictyostelium discoideum GN=DDB_G0274399 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 48/134 (35.82%), Postives = 71/134 (52.99%), Query Frame = -3
Query:  377 GTGSFYNEGEAEIVVHHVFSLICAGVSP-----SAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTL--GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 757
            G GS +NE E ++ ++ +F L    V P     S I + SPY  QV  LRE     P   G+ + T+D FQGRE + +I S VR+       +GFL D RRMNVA+TR    + ++ ++  +  N     L++H
Sbjct:  711 GGGSVFNEHECKMAMY-LFQLFTK-VYPDEDFASRIGIISPYRQQVLALREIFKNYP---GISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQH 839          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: ZNFX1_MOUSE (NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = -3
Query:  371 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 748
            S  N+ EA  +V     L+C    PS I + + Y  Q+  LR +L  +   AG++V  +D +QG E D +++S+VRSN  G VGFL    R+ VA++RA K +  + +   +      +R++  +R
Sbjct: 1120 SHQNQHEAHFLVELCQYLLCQEYLPSQITILTTYTGQLFCLR-KLMPVKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSRIIHTLR 1244          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: ZNFX1_HUMAN (NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = -3
Query:  371 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 748
            S  N+ EA  VV      +C    PS I + + Y  Q+  LR +L      AGV V  +D +QG E D +++S+VRSN  G VGFL  S R+ VA++RA K +  + +   +      ++++  +R
Sbjct: 1127 SHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLR-KLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLR 1251          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: YGSA_SCHPO (Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe GN=SPBC29A10.10c PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 51/167 (30.54%), Postives = 79/167 (47.31%), Query Frame = -3
Query:  323 LGCEEHLDLAGTGSF------YNEGEAEIVVHHVFSLICAGVS---PSAIAVQSPYVAQVQLLRERLDELPEAA---GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGS 787
            LG     ++ GT +F      YN  EA  ++     LI   ++      I V +PY +QVQ LR +      +     +++ T+D FQG+E D +I S VRS+  G +GFL D RR+NVA+TRA   + +V +S  +        L+   +  G  +      F  S
Sbjct: 1622 LGIYRFFNVHGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVWRDLSANQFKNS 1788          
The following BLAST results are available for this feature:
BLAST of CN187836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
DNA2_YEAST4.222e-1235.48DNA replication ATP-dependent helicase DNA2 OS=Sac... [more]
DNA2L_MOUSE4.222e-1240.54DNA2-like helicase OS=Mus musculus GN=Dna2 PE=2 SV... [more]
DNA2_SCHPO7.202e-1236.36DNA replication ATP-dependent helicase dna2 OS=Sch... [more]
Y104_METJA9.406e-1242.45Uncharacterized ATP-dependent helicase MJ0104 OS=M... [more]
Y4399_DICDI2.737e-1135.82Probable helicase DDB_G0274399 OS=Dictyostelium di... [more]
ZNFX1_MOUSE4.668e-1132.54NFX1-type zinc finger-containing protein 1 OS=Mus ... [more]
ZNFX1_HUMAN6.097e-1133.33NFX1-type zinc finger-containing protein 1 OS=Homo... [more]
YGSA_SCHPO6.097e-1130.54Uncharacterized ATP-dependent helicase C29A10.10c ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187836 ID=CN187836; Name=CN187836; organism=Citrus sinensis; type=EST; length=795bp
TTTTTATAAATTGCAACAATTTTTTTTCTTTTTCATTTGTATCGTATCAC
CCTTAGAACGTATAATCTGTGTAGTTTATATACAAATCCATATTCGACGG
TCAATGCATTTACGAACGACTTTTTTCTGTTGAAAAAATGAAGGTGGGGC
TGTACATAAATTGATGCAGAAGCAGATGCTGAGAAGAAAATAGGACAAGA
ATCTACATTACTGAAGTCCTCCCAAACAATCACTGCCTAAGAAAGAAATA
GTAAGTTACCAAATTGATCTGCTTAAGCTTTTGTTAACTGATTGATGGCA
ACATTGGGTCCATGCCAAGTCCAGATCCACCAAACGAACCAGGTTCGGCA
TGCTTCACCCTACCAAAATAACGGATATGACGCAAGAGTCTGGCCAGGAA
GGTATTGTGGCATATTGTTGAGCTGTCGCACACAACTGCTACATGTTTGC
ATGCTCTTGTTATGGCAACATTCATTCGCCTACTATCCCCAAGAAAGCCA
ACAGCTCCCAAAGTGTTTGACCGGACCATTGATATAATCACTGCATCAGC
CTCCCGGCCTTGAAAGCTATCAATAGTTGCTACCTCAACACCTGCAGCCT
CTGGAAGCTCATCAAGCCTTTCTCTCAGGAGTTGTACCTGAGCAACGTAA
GGTGATTGCACTGCAATTGCTGATGGGCTGACACCTGCACAAATCAAGGA
GAAAACATGATGCACAACAATTTCTGCTTCCCCTTCATTGTAGAATGAGC
CTGTGCCAGCTAGATCTAGATGCTCTTCACAACCAAGTGATAAAC
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