CN187836
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26 Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = -3 Query: 347 LDLAGTGSFY----------NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 769 +D AG G F N GE +V H+ +L+ AGV IAV SPY QV LLR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A Sbjct: 491 VDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.145e-25 Identity = 66/142 (46.48%), Postives = 93/142 (65.49%), Query Frame = -3 Query: 347 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 769 LD + S N GE +V H+ +L+ AGV IAV +PY QV LLR+ L ++ PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A Sbjct: 500 LDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTA 638
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.495e-25 Identity = 63/132 (47.73%), Postives = 89/132 (67.42%), Query Frame = -3 Query: 347 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 739 N GE +V H+ +L+ AGV IAV +PY QV LLR+ L ++ PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A Sbjct: 510 NPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.550e-25 Identity = 62/132 (46.97%), Postives = 89/132 (67.42%), Query Frame = -3 Query: 347 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 739 N GE +V H+ +L+ AGV IAV +PY QV LLR+ L ++ PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A Sbjct: 510 NPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTA 638
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.470e-20 Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = -3 Query: 413 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 739 N EA+IV +H+ L+ AG+ IAV +PY AQV L+R+ L E + VE+ ++D QGRE +A+I S+VRSN + VGFL + RR+NVAITR +H+ V+ DS+T+ Sbjct: 525 NHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKE--KGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTV 631
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19 Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = -3 Query: 395 GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 751 GS YNEGE IV H+ +L V ++I V SPY AQV L++ + + + +E++T+D FQGRE D +I+S+VRSN VGFL + RR+NVA+TR + + VV + + C N +L Sbjct: 541 GSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYL 661
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa GN=2E4.130 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15 Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = -3 Query: 371 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDEL-----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 790 +LG EE + +GT S+ N EA V V AGV P+ I V +PY Q + + VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ + +C + LL H + Sbjct: 736 NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFK 878
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15 Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = -3 Query: 371 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-------DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 775 E L +GT SF N EA V V LI AGV P I V + Y Q + + +L E VE+A++D+FQGRE D +I++ VRSN + +GFL D RR+NVAITRA + +V ++ + + L+ H + Sbjct: 729 EELSASGT-SFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYE--NVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYK 867
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14 Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = -3 Query: 371 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY----------VAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 778 +E + +GT S+ N EA V V + + +GV PS I V +PY +A+ LR++L + +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+TRA + ++ + + LL H + Sbjct: 774 QEEISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYK-----EIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYK 913
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae GN=NAM7 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14 Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = -3 Query: 362 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY------VAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 775 E + GT SF N EA + L GV P I V +PY + Q + LD+ VEVA++D+FQGRE D +I+S VR+N A+GFL D RR+NV +TRA + ++ + ++ NT LL H R G Sbjct: 691 EEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDK-DLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832 The following BLAST results are available for this feature:
BLAST of CN187836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187836 ID=CN187836; Name=CN187836; organism=Citrus sinensis; type=EST; length=795bpback to top |