CN187807
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1) HSP 1 Score: 350.517 bits (898), Expect = 5.903e-96 Identity = 170/246 (69.11%), Postives = 196/246 (79.67%), Query Frame = 2 Query: 5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRE 742 TLDGVRDETGAS + WAIW R+WTAEENRHGDLL +LYLSGRVDM IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTARL+KE GD LA+ICG IASDEKRHE AY +IVEKL E DP G ++A AD+M KKI MPAHLMYDG D LF ++++VAQR+GVYTA DYADILEFL+GRW R+AQE++CGL PRIRRL+E A R K + +KFSWI +RE Sbjct: 145 TLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDIKLAQICGMIASDEKRHETAYTKIVEKLFESDPDGTVMAFADMMRKKIAMPAHLMYDGRDDNLFDNYSSVAQRIGVYTAKDYADILEFLVGRWKVEQLTGLSGEGRKAQEYICGLPPRIRRLEERAQARVK--ESSTLKFSWIHDRE 388
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 2.930e-95 Identity = 166/249 (66.67%), Postives = 200/249 (80.32%), Query Frame = 2 Query: 5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751 TLDGVRDETGAS + WAIW R+WTAEENRHGDLL +LYL+GRVDM IEKT+QYLI +GMDP +ENNPYLGF+YTSFQERATFISHGNTARL+K+ GD LA++CG IA+DEKRHE AY +IVEKL E+DP GA++A+AD+M KK++MPAHLMYDG D LF +++AVAQ++GVYTA DYADILE L+ RW +AQ+FVCGLAPRIR+L E A +K + LV FSWIFN+EL + Sbjct: 152 TLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLTGRVDMKQIEKTIQYLIGSGMDPRSENNPYLGFIYTSFQERATFISHGNTARLAKDHGDFQLAQVCGIIAADEKRHETAYTKIVEKLFEIDPDGAVLALADMMRKKVSMPAHLMYDGKDDNLFENYSAVAQQIGVYTAKDYADILEHLVNRWKVENLMGLSGEGHKAQDFVCGLAPRIRKLGERAQSLSKPVS--LVPFSWIFNKELKV 398
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 2.930e-95 Identity = 167/249 (67.07%), Postives = 197/249 (79.12%), Query Frame = 2 Query: 5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751 TLDGVRDETGAS + WA+W R+WTAEENRHGDLL ++YL+GRVDM IEKT+QYLI +GMDPGTENNPYLGF+YTSFQERATFISHGNTAR +KE GD LA+ICGTIA+DEKRHE AY +IVEKL E+DP ++A AD+M KI+M AHLMYDG D LF H +AVAQRLGVYT DYAD+LEFL+ RW RRAQ+FVC LAPRIRRL E A RAK + P++ FSW+++R++ L Sbjct: 144 TLDGVRDETGASPTTWAVWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTENNPYLGFLYTSFQERATFISHGNTARHAKEYGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDYTVLAFADMMRNKISMTAHLMYDGKDDNLFEHLSAVAQRLGVYTVRDYADMLEFLVQRWKVADLTGLSGEGRRAQDFVCTLAPRIRRLDERAQARAK--QAPVIPFSWVYDRKVQL 390
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_LINUS (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1) HSP 1 Score: 345.895 bits (886), Expect = 1.454e-94 Identity = 170/249 (68.27%), Postives = 199/249 (79.92%), Query Frame = 2 Query: 5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751 TLDGVRDETGAS +PWAIW R+WTAEENRHGDLL +LYLSGRVDM IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTARL+K+ GD LA+ICG IA+DEKRHE AY +IVEKL E+DP G ++A+AD+M KKI+MPAHLMYDG D LF ++++VAQR+G TA DYADILEFL+GRW +AQ+FVCGL RIR+L+E A RAK+ V FSWIF+REL L Sbjct: 150 TLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKDHGDMKLAQICGIIAADEKRHETAYTKIVEKLFEIDPDGTVLALADMMRKKISMPAHLMYDGEDDNLFDNYSSVAQRIG-DTAKDYADILEFLVGRWKVDAFTGLSGEGNKAQDFVCGLPARIRKLEERAAGRAKQTSKS-VPFSWIFSRELVL 396
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_HELAN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Helianthus annuus PE=2 SV=1) HSP 1 Score: 343.199 bits (879), Expect = 9.424e-94 Identity = 168/249 (67.47%), Postives = 197/249 (79.12%), Query Frame = 2 Query: 5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751 TLDGVRDETGA+ +W R+WTAEENRHGDLL +LYLSGRVDM I+KT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTAR +KE GD LA++CG IA+DEKRHE AY +IVEKL E+DP G ++A AD+M KKI+MPAHLMYDG D LF +F+AVAQRLGVYTA DYADILEFL+GRW R+AQ++VCGLAPRIRRL+E RAK + V FSWIF+RE+ L Sbjct: 150 TLDGVRDETGATLLLGLVWTRAWTAEENRHGDLLHQYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARHAKEHGDVKLAQMCGIIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFENFSAVAQRLGVYTAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCGLAPRIRRLEERNSARAK--ESVNVPFSWIFDREVKL 396
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 2.173e-90 Identity = 159/249 (63.86%), Postives = 192/249 (77.11%), Query Frame = 2 Query: 5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751 TLDG RDETGAS +PWAIW R+WTAEENRHGDLL +LYLSGRVDM IE+T+QYLI +GMDP TEN+PY GF+YTSFQERATFISHGNT RL+KE GD LA+ICG+IASDEKRHE AY +IVEKL E+DP ++A AD+M KKI MPA +YDG D LF H++AVAQR+GVYTA DY DI+E L+ RW R+AQ+++C L RIRRL+E A ++A+ P+ FSWIF+RE+ L Sbjct: 150 TLDGTRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIERTIQYLIGSGMDPHTENSPYRGFIYTSFQERATFISHGNTGRLAKEYGDINLAQICGSIASDEKRHETAYTKIVEKLFEIDPDETVLAFADMMKKKIAMPAEFIYDGRDYNLFDHYSAVAQRIGVYTAKDYVDIVEHLVDRWKVKELAGLSAEGRKAQDYLCSLPSRIRRLEERAQEKAQG-STPVSPFSWIFDREVKL 397
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_CORSA (Omega-12 acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Coriandrum sativum PE=2 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 1.611e-85 Identity = 149/245 (60.82%), Postives = 184/245 (75.10%), Query Frame = 2 Query: 11 DGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNREL 745 DG++D+TGA + WA W R+WTAEENRHGDLL +LYLSGRVDM MIEKT+QYLI +GMD TEN PY+GF+YTSFQERATFISH NTA+L++ GD LA++CG IASDEKRH AY +IVEKL E+DP +IA +D+M KKI MPAH MYDG D LF HF AVAQ++GVY+A DY DI++FL+ +W R+AQE+VC LA +IRR++E + KK P V FSWIFNR++ Sbjct: 140 DGIKDDTGAQPTSWATWTRAWTAEENRHGDLLNKYLYLSGRVDMRMIEKTIQYLIGSGMDTKTENCPYMGFIYTSFQERATFISHANTAKLAQHYGDKNLAQVCGNIASDEKRHATAYTKIVEKLAEIDPDTTVIAFSDMMRKKIQMPAHAMYDGSDDMLFKHFTAVAQQIGVYSAWDYCDIIDFLVDKWNVAKMTGLSGEGRKAQEYVCSLAAKIRRVEEKVQGKEKKAVLP-VAFSWIFNRQI 383 The following BLAST results are available for this feature:
BLAST of CN187807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187807 ID=CN187807; Name=CN187807; organism=Citrus sinensis; type=EST; length=777bpback to top |