CN187807

Overview
NameCN187807
Unique NameCN187807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5516 contig Csv1_Contig5516:139..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 5.903e-96
Identity = 170/246 (69.11%), Postives = 196/246 (79.67%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRE 742
            TLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTARL+KE GD  LA+ICG IASDEKRHE AY +IVEKL E DP G ++A AD+M KKI MPAHLMYDG D  LF ++++VAQR+GVYTA DYADILEFL+GRW            R+AQE++CGL PRIRRL+E A  R K  +   +KFSWI +RE
Sbjct:  145 TLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDIKLAQICGMIASDEKRHETAYTKIVEKLFESDPDGTVMAFADMMRKKIAMPAHLMYDGRDDNLFDNYSSVAQRIGVYTAKDYADILEFLVGRWKVEQLTGLSGEGRKAQEYICGLPPRIRRLEERAQARVK--ESSTLKFSWIHDRE 388          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.930e-95
Identity = 166/249 (66.67%), Postives = 200/249 (80.32%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYL+GRVDM  IEKT+QYLI +GMDP +ENNPYLGF+YTSFQERATFISHGNTARL+K+ GD  LA++CG IA+DEKRHE AY +IVEKL E+DP GA++A+AD+M KK++MPAHLMYDG D  LF +++AVAQ++GVYTA DYADILE L+ RW             +AQ+FVCGLAPRIR+L E A   +K +   LV FSWIFN+EL +
Sbjct:  152 TLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLTGRVDMKQIEKTIQYLIGSGMDPRSENNPYLGFIYTSFQERATFISHGNTARLAKDHGDFQLAQVCGIIAADEKRHETAYTKIVEKLFEIDPDGAVLALADMMRKKVSMPAHLMYDGKDDNLFENYSAVAQQIGVYTAKDYADILEHLVNRWKVENLMGLSGEGHKAQDFVCGLAPRIRKLGERAQSLSKPVS--LVPFSWIFNKELKV 398          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.930e-95
Identity = 167/249 (67.07%), Postives = 197/249 (79.12%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS + WA+W R+WTAEENRHGDLL  ++YL+GRVDM  IEKT+QYLI +GMDPGTENNPYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA+DEKRHE AY +IVEKL E+DP   ++A AD+M  KI+M AHLMYDG D  LF H +AVAQRLGVYT  DYAD+LEFL+ RW            RRAQ+FVC LAPRIRRL E A  RAK  + P++ FSW+++R++ L
Sbjct:  144 TLDGVRDETGASPTTWAVWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTENNPYLGFLYTSFQERATFISHGNTARHAKEYGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDYTVLAFADMMRNKISMTAHLMYDGKDDNLFEHLSAVAQRLGVYTVRDYADMLEFLVQRWKVADLTGLSGEGRRAQDFVCTLAPRIRRLDERAQARAK--QAPVIPFSWVYDRKVQL 390          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_LINUS (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.454e-94
Identity = 170/249 (68.27%), Postives = 199/249 (79.92%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTARL+K+ GD  LA+ICG IA+DEKRHE AY +IVEKL E+DP G ++A+AD+M KKI+MPAHLMYDG D  LF ++++VAQR+G  TA DYADILEFL+GRW             +AQ+FVCGL  RIR+L+E A  RAK+     V FSWIF+REL L
Sbjct:  150 TLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKDHGDMKLAQICGIIAADEKRHETAYTKIVEKLFEIDPDGTVLALADMMRKKISMPAHLMYDGEDDNLFDNYSSVAQRIG-DTAKDYADILEFLVGRWKVDAFTGLSGEGNKAQDFVCGLPARIRKLEERAAGRAKQTSKS-VPFSWIFSRELVL 396          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_HELAN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 9.424e-94
Identity = 168/249 (67.47%), Postives = 197/249 (79.12%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGA+     +W R+WTAEENRHGDLL  +LYLSGRVDM  I+KT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTAR +KE GD  LA++CG IA+DEKRHE AY +IVEKL E+DP G ++A AD+M KKI+MPAHLMYDG D  LF +F+AVAQRLGVYTA DYADILEFL+GRW            R+AQ++VCGLAPRIRRL+E    RAK  +   V FSWIF+RE+ L
Sbjct:  150 TLDGVRDETGATLLLGLVWTRAWTAEENRHGDLLHQYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARHAKEHGDVKLAQMCGIIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFENFSAVAQRLGVYTAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCGLAPRIRRLEERNSARAK--ESVNVPFSWIFDREVKL 396          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.173e-90
Identity = 159/249 (63.86%), Postives = 192/249 (77.11%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDG RDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IE+T+QYLI +GMDP TEN+PY GF+YTSFQERATFISHGNT RL+KE GD  LA+ICG+IASDEKRHE AY +IVEKL E+DP   ++A AD+M KKI MPA  +YDG D  LF H++AVAQR+GVYTA DY DI+E L+ RW            R+AQ+++C L  RIRRL+E A ++A+    P+  FSWIF+RE+ L
Sbjct:  150 TLDGTRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIERTIQYLIGSGMDPHTENSPYRGFIYTSFQERATFISHGNTGRLAKEYGDINLAQICGSIASDEKRHETAYTKIVEKLFEIDPDETVLAFADMMKKKIAMPAEFIYDGRDYNLFDHYSAVAQRIGVYTAKDYVDIVEHLVDRWKVKELAGLSAEGRKAQDYLCSLPSRIRRLEERAQEKAQG-STPVSPFSWIFDREVKL 397          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_CORSA (Omega-12 acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Coriandrum sativum PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.611e-85
Identity = 149/245 (60.82%), Postives = 184/245 (75.10%), Query Frame = 2
Query:   11 DGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNREL 745
            DG++D+TGA  + WA W R+WTAEENRHGDLL  +LYLSGRVDM MIEKT+QYLI +GMD  TEN PY+GF+YTSFQERATFISH NTA+L++  GD  LA++CG IASDEKRH  AY +IVEKL E+DP   +IA +D+M KKI MPAH MYDG D  LF HF AVAQ++GVY+A DY DI++FL+ +W            R+AQE+VC LA +IRR++E    + KK   P V FSWIFNR++
Sbjct:  140 DGIKDDTGAQPTSWATWTRAWTAEENRHGDLLNKYLYLSGRVDMRMIEKTIQYLIGSGMDTKTENCPYMGFIYTSFQERATFISHANTAKLAQHYGDKNLAQVCGNIASDEKRHATAYTKIVEKLAEIDPDTTVIAFSDMMRKKIQMPAHAMYDGSDDMLFKHFTAVAQQIGVYSAWDYCDIIDFLVDKWNVAKMTGLSGEGRKAQEYVCSLAAKIRRVEEKVQGKEKKAVLP-VAFSWIFNRQI 383          
The following BLAST results are available for this feature:
BLAST of CN187807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_SOYBN5.903e-9669.11Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SIMCH2.930e-9566.67Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ORYSJ2.930e-9567.07Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_LINUS1.454e-9468.27Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_HELAN9.424e-9467.47Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI2.173e-9063.86Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CORSA1.611e-8560.82Omega-12 acyl-[acyl-carrier-protein] desaturase, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187807 ID=CN187807; Name=CN187807; organism=Citrus sinensis; type=EST; length=777bp
GAGGACGCTCGATGGTGTCAGAGATGAGACCGGTGCAAGTTCCAGCCCAT
GGGCTATTTGGAACCGCTCCTGGACTGCTGAGGAAAACCGCCATGGAGAT
TTGCTCAGGAGCTTCTTGTATTTGTCGGGTCGGGTCGATATGCTCATGAT
TGAGAAGACTGTCCAGTATCTTATCAGTGCTGGCATGGACCCTGGGACAG
AGAACAACCCGTATTTGGGCTTTGTTTACACATCGTTTCAAGAGCGCGCC
ACTTTCATATCACACGGCAACACGGCCCGCCTGTCGAAAGAGGGAGGTGA
TCCAGTGCTCGCGCGCATATGTGGAACCATTGCATCAGACGAGAAGCGCC
ACGAAAACGCCTACGCTAGGATCGTCGAAAAGCTCCTTGAAGTGGATCCC
ACGGGTGCCATGATCGCAATTGCTGATCTGATGAACAAGAAAATCACAAT
GCCAGCTCACTTGATGTACGATGGGCATGACCCACGGCTGTTTGCGCATT
TTGCGGCAGTGGCTCAGCGGCTTGGCGTGTATACGGCACATGACTATGCG
GATATTTTAGAGTTTTTGATTGGACGGTGGGGATTGGAAAAGCTGGAAGG
CTTGACGGGTGAAGGGAGACGTGCACAAGAGTTTGTGTGCGGCTTAGCGC
CTAGGATTAGGCGACTGCAGGAGTTAGCCGATCAGCGAGCCAAGAAGCTG
AAGCCGCCTCTCGTTAAGTTTAGCTGGATTTTTAATAGGGAACTCAGCCT
GTAAAAATTAAAATTAAAAACCCCAAA
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