CN186276

Overview
NameCN186276
Unique NameCN186276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPOR (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus oryzae GN=int6 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.071e-56
Identity = 102/245 (41.63%), Postives = 168/245 (68.57%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQTN 846
            YDL  ++ P LDRHLVFPLLEF   +    D++I+++K ELL  TNM DY  ++ + + +++ +P + V++R EV+A+L+  +E +A I   LQ+ +   +LR+ D+  NL+ L +++ + P+ + +L+ Y +FQ+ CG+Y  AA+ LYQ+R L T++++  SA WGK+A+EIL  +W+ A+EE+ + KE + + + F +PL Q+Q+R WL+HWSLF FFN+D  R ++ DLF    Y+N IQT+
Sbjct:   31 YDLLPKLIPFLDRHLVFPLLEFSSGQD--DDKEIVRAKYELLKHTNMTDYVANLWQEINNSDTIPDEFVKKREEVLAKLQHYQEESAKITELLQDEDVVGNLRS-DKVANLKFLEEQHGVTPEMVNSLFDYGRFQYSCGSYGNAAELLYQFRVLSTDNDKVASATWGKLASEILTTSWEAAMEEVQKAKESI-ETRLFNNPLGQLQNRSWLIHWSLFPFFNYDPARDVLTDLFFSPAYINTIQTH 271          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPNC (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=int6 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.317e-56
Identity = 103/245 (42.04%), Postives = 167/245 (68.16%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQTN 846
            YDL  ++ P LDRHLVFPLLEF    Q   D++++++K ELL  TNM DY  ++ K +  ++ +P + V++R EV+A+L+  +E++A I   LQ+ +   +LR+ D+  NL+ L + + +  D + +L+ Y +FQ+ CG+Y  AA+ LYQ+R L T++++  SA WGK+A+EIL  +WD A+EE+ ++K+ + + + F +PL Q+Q+R WL+HWSLF FFN+D  R ++ DLF    Y+N IQT+
Sbjct:   31 YDLLPKLIPYLDRHLVFPLLEFSSGSQE-DDKEMIRAKYELLKHTNMTDYVANLWKEINDSDTIPDEFVKKREEVLAKLQHYQEQSAKITELLQDEDVVGNLRS-DKVANLKFLEEEHGVTADMVNSLFDYGRFQYSCGSYGNAAELLYQFRVLSTDNDKVASATWGKLASEILTTSWDGAMEEVQKVKDSI-ETRLFNNPLGQLQNRSWLIHWSLFPFFNYDPARDVLTDLFFSPAYINTIQTS 272          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_BOMMO (Eukaryotic translation initiation factor 3 subunit E OS=Bombyx mori GN=eIF3-S6 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.070e-56
Identity = 107/251 (42.63%), Postives = 170/251 (67.73%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPN---SFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDD--PKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQT 843
            +DLT +I   LDRHLVFPLLEFL  ++ Y   ++L++K+E+L+KTNM+DY  DI + LY  ED P+++++RR  V++ L+ L++   P++  +Q  +   + + +R      N    N  Y+   + I+++Y+ AK+++ECGNY  +A YLY  + + + +++  LS LWGK+A+EIL+QNWD AL++L +L+E +D+    S  S +  +Q R WL+HWSLF+FFNH  GR LII++F ++  YLNAIQT
Sbjct:    6 FDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQT 256          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPTN (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=int6 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.547e-55
Identity = 102/245 (41.63%), Postives = 167/245 (68.16%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQTN 846
            YDL  ++ P LDRHLVFPLLEF   +    D++++++K ELL  TNM DY  ++ K + +++ +P + V++R EV+A+L+  +E ++ I   LQ+     +LR+ D+  NL+ L +++ +  D + +LY Y +FQ+ CG+Y  AA+ LYQ+R L T++++  SA WGK+A+EIL  +W+ A+EE+ ++KE + + + F +PL Q+++R WL+HWSLF FFN+D  R ++ DLF    Y+N IQTN
Sbjct:   31 YDLLPKLIPYLDRHLVFPLLEFSSGQD--DDKEVVRAKYELLKHTNMTDYVANLWKEINNSDTIPDEFVKKREEVLAKLENYQEESSKITELLQDEAVVGNLRS-DKVANLRFLEEQHGVTLDMVNSLYDYGRFQYSCGSYGTAAELLYQFRVLSTDNDKVASATWGKLASEILTTSWEGAMEEVQKVKESI-ETRLFNNPLGQLENRSWLIHWSLFPFFNYDPARDVLTDLFFSPAYINTIQTN 271          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_EMENI (Eukaryotic translation initiation factor 3 subunit E OS=Emericella nidulans GN=int6 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.500e-54
Identity = 99/245 (40.41%), Postives = 162/245 (66.12%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQTN 846
            YDL  ++ P LDRHLVFPLLEF   +    D +I+++K ELL  TNM DY  ++ + + +++ +P + V++R EV+A+L+  +  +  I   LQ+     +LR+ D+  NL+ L +++ +  + + +LY Y +FQ+ CG+Y  AA+ LYQ+R L T++++  SA WGK+A+EIL  NW+ A+EE+ + K+ + + + F +P+ Q+ +R WL+HWSLF FFNHD  R ++ DLF    Y+N IQT+
Sbjct:   29 YDLLPKLIPYLDRHLVFPLLEFSSGQD--DDSEIVRAKYELLKHTNMTDYVANLWQEINNSDTIPDEFVKKREEVLAKLQHYQNESEKITELLQDEAVVGNLRS-DKVANLRFLEEQHGVTIEMVNSLYDYGRFQYSCGSYGNAAELLYQFRVLSTDNDKVASATWGKLASEILTTNWEAAMEEVQKAKDSI-ETRLFNNPVGQLHNRSWLIHWSLFPFFNHDPARDVLTDLFFSPAYINTIQTS 269          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_CRYNE (Eukaryotic translation initiation factor 3 subunit E OS=Cryptococcus neoformans GN=INT6 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.567e-52
Identity = 103/253 (40.71%), Postives = 154/253 (60.87%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRAN-DQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDP--KSFTSPLNQMQSRIWLMHWSLFIFFN--HDNGRTLIIDLFHQDKYLNAIQTN 846
            MA YDLTQ++ P+LDRHL  PLL  L +  +YP EQ+ +++ +L   TNMV+Y    H  + + E  P D    R E  A+ + L+E+A P+   +++P++   LR+  D+  NL +L   YQI  DQI ALY + ++Q+  G+Y  A + LY +  L  + E  +SA WGK+A+ IL   WD AL ++  L+E +D+P   S   PL Q+Q+R WL+HWSLF+FFN   + G   ++D+F    YLN IQT+
Sbjct:    1 MADYDLTQKLIPHLDRHLAIPLLNHLSDIAIYPAEQLARAQYDLAKGTNMVNYVEQFHAQIENAE--PTDFARLRDEATAKYQELQEKAQPVTKVIEDPDAVAKLRSGGDKDRNLDLLRSEYQIDIDQINALYHFGQYQYSLGDYGSAGNLLYHFLILSPSYELNISAQWGKLASNILNGEWDAALMQVRDLRETIDNPHGTSLAKPLAQLQARTWLLHWSLFVFFNLGENQGCQGLLDMFLSPAYLNTIQTS 251          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_BOTFB (Eukaryotic translation initiation factor 3 subunit E OS=Botryotinia fuckeliana (strain B05.10) GN=int6 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.355e-51
Identity = 95/243 (39.09%), Postives = 148/243 (60.91%), Query Frame = 1
Query:  115 DLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQT 843
            DL  ++  +LDRHL+FPLL+F+ ++   P  +I K+K ELL KTNM DY   +H  +   ++ P++   +R E++ RL+   + +  I   L   +    LR+ D+  NL+ L   + +  + +  LY +  FQ+ CGNY  AA+ LYQ+R L T+ ++  +A WGK+A EIL  NW+ A+EE+ ++KE + + K F  PL Q+  R WL+HW+LF FFNH+  R +I DLF    ++N IQT
Sbjct:   32 DLLPKLITHLDRHLIFPLLQFVGDQDDEPSPEITKAKFELLKKTNMTDYVASLHCEIEGVDEAPKEYANKRQEILQRLEIFGQESEKITDLLGREDVVTGLRS-DKVANLEFLKKEHDVTIEMVNVLYDFGNFQYSCGNYGAAAELLYQFRVLSTDDDKVTAATWGKLACEILTGNWESAMEEVQKVKESI-ETKLFNKPLAQLHHRTWLIHWALFPFFNHEPARDVICDLFFSPAFINTIQT 272          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_DROSI (Eukaryotic translation initiation factor 3 subunit E OS=Drosophila simulans GN=eIF3-S6 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.943e-51
Identity = 105/252 (41.67%), Postives = 160/252 (63.49%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIV---SFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLY-QYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQT 843
            MA +DLT+     LDRHL FPLLEFL  +++Y  +++L+  +E +NKTNM+DY MD  K L  ++++P+++V+R+ EV+A LK L+   API+     L+N  S +D +       +  L   Y    + +E+ Y+ AK+ +ECGNY  +  YLY     +  N +  L+ LWGK+AAEIL  NW+ ALE+L +L++ +D+     S +  +Q R WL+HWS+ +FFNH  GR LII++F ++  YLNAIQT
Sbjct:    1 MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNMIDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILKNGESMKDSKT-----FVNALQKDYNFKVEHLESAYKLAKYLYECGNYQESTSYLYFCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNAN--FSTIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQT 245          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_DROME (Eukaryotic translation initiation factor 3 subunit E OS=Drosophila melanogaster GN=eIF3-S6 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.943e-51
Identity = 105/252 (41.67%), Postives = 160/252 (63.49%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIV---SFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLY-QYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQT 843
            MA +DLT+     LDRHL FPLLEFL  +++Y  +++L+  +E +NKTNM+DY MD  K L  ++++P+++V+R+ EV+A LK L+   API+     L+N  S +D +       +  L   Y    + +E+ Y+ AK+ +ECGNY  +  YLY     +  N +  L+ LWGK+AAEIL  NW+ ALE+L +L++ +D+     S +  +Q R WL+HWS+ +FFNH  GR LII++F ++  YLNAIQT
Sbjct:    1 MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNMIDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILKNGESMKDSKT-----FVNALQKDYNFKVEHLESAYKLAKYLYECGNYQESTSYLYFCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNAN--FSTIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQT 245          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_SCLS1 (Eukaryotic translation initiation factor 3 subunit E OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=int6 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.150e-51
Identity = 95/243 (39.09%), Postives = 148/243 (60.91%), Query Frame = 1
Query:  115 DLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQT 843
            DL  ++  +LDRHL+FPLL+F+ ++   P  +I K+K ELL KTNM DY   ++  +   E+ P++   +R E++ RL+   + +  I   L   +    LR+ D+  NL+ L   + +  D +  LY +  FQ+ CGNY  AA+ LYQ+R L T+ ++  +A WGK+A EIL  NW+ A+EE+ ++KE + + K F  P+ Q+  R WL+HW+LF FFNH+  R +I DLF    ++N IQT
Sbjct:   31 DLLPKLITHLDRHLIFPLLQFVADQDEEPSPEITKAKFELLKKTNMTDYVASLYCEIEGVEEPPKEYATKRQEILQRLEIFGQESEKITDLLGREDVVTGLRS-DKVANLEFLKKEHDVTIDMVNVLYDFGNFQYSCGNYGAAAELLYQFRVLSTDDDKVTAATWGKLACEILTGNWESAMEEVQKVKELI-ETKLFNKPVAQLNHRTWLIHWALFPFFNHEPARDVICDLFFSPAFINTIQT 271          
The following BLAST results are available for this feature:
BLAST of CN186276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_ASPOR4.071e-5641.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPNC5.317e-5642.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOMMO9.070e-5642.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPTN1.547e-5541.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_EMENI6.500e-5440.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CRYNE3.567e-5240.71Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOTFB1.355e-5139.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DROSI3.943e-5141.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DROME3.943e-5141.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_SCLS15.150e-5139.09Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186276 ID=CN186276; Name=CN186276; organism=Citrus sinensis; type=EST; length=851bp
CAAACCTAAACACTAACGCTCGTCCTCAGTTTGCTCTTCGTCTACAGAAG
AACAGCAGCAGCAGACGCCGCTGCCGCCGAGGAACGAAATTTCAACGCGA
CAATGGCGACGTACGATTTGACACAGAGAATCGCGCCGAATCTGGACCGG
CATCTGGTGTTTCCGCTGCTGGAGTTTCTCCAAGAGCGGCAGATGTACCC
GGACGAGCAGATTCTGAAATCGAAGATAGAGCTCTTGAACAAGACGAACA
TGGTCGACTACGCGATGGACATCCACAAGAGCCTCTACCACACCGAAGAC
GTCCCGCAGGATATGGTCGAGCGGAGGGTCGAGGTCGTCGCTCGTTTGAA
GGCCCTGGAGGAGCGCGCCGCCCCGATCGTTTCGTTCTTGCAGAACCCTA
ACTCCTTTCAAGATTTGAGAGCTAATGACCAGCACTACAATTTGCAGATG
CTTAACGACCGTTACCAGATTGGCCCGGATCAGATCGAGGCGCTTTATCA
GTATGCCAAATTTCAGTTTGAATGTGGGAACTACTCTGGGGCTGCTGACT
ATCTGTACCAGTACAGGGCCTTGTGCACAAACAGTGAAAGGAGGCTGAGT
GCATTATGGGGAAAAATGGCGGCTGAGATATTGATGCAGAATTGGGATAT
TGCTCTTGAAGAACTTAATCAATTAAAGGAAAAAGTTGATGACCCAAAGA
GTTTCACTTCACCTTTAAATCAGATGCAGAGTAGGATATGGCTAATGCAT
TGGAGTCTCTTCATCTTTTTCAATCATGATAATGGGAGAACACTGATCAT
TGACTTGTTTCATCAGGATAAGTATCTAAATGCCATTCAAACCAATGCTC
C
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