CN186276

Overview
NameCN186276
Unique NameCN186276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_DROSE (Eukaryotic translation initiation factor 3 subunit E OS=Drosophila sechellia GN=eIF3-S6 PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.269e-49
Identity = 105/252 (41.67%), Postives = 159/252 (63.10%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIV---SFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLY-QYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQT 843
            MA +DLT+     LDRHL FPLLEFL  +++Y  +++L+  +E +NKTNM+DY MD  K L  ++++P+++V+R+ EV+A LK L+   API+     L+N  S +D +       +  L   Y    + +E+ Y  AK+ +ECGNY  +  YLY     +  N +  L+ LWGK+AAEIL  NW+ ALE+L +L++ +D+     S +  +Q R WL+HWS+ +FFNH  GR LII++F ++  YLNAIQT
Sbjct:    1 MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNMIDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILKNGESMKDSKT-----FVNALQKDYNFKVEHLESAY-LAKYLYECGNYQESTSYLYFCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNAN--FSTIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQT 244          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_NEUCR (Eukaryotic translation initiation factor 3 subunit E OS=Neurospora crassa GN=int-6 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.164e-49
Identity = 99/258 (38.37%), Postives = 158/258 (61.24%), Query Frame = 1
Query:   88 NFNATMATYDLTQRIAPNLDRHLVFPLLEF----LQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQTNA 849
            N +   A YDL  ++AP+LDRH++FPLLEF    L+E +     +IL +K  LL KTNM DY  +++  L   ++ P +  ERR +V  +L+  E+  A I   LQ  +   +LR+ D+  NL+ L   + +  D + ALY + + Q+ CGNY+ A++ LY++R L T++++   A WG++A EIL  NW+ A+EEL +++E + D +   +PL Q+Q R  L+HW+LF  FN+D  R  ++DLF    ++N IQ N+
Sbjct:   10 NGDVAPANYDLVLKLAPHLDRHMIFPLLEFNAGRLKEDETDKAREILAAKYALLKKTNMTDYVANLYCELEGLKEPPAEYAERRQKVFHQLEKYEQETAKITELLQRDDVVNNLRS-DKVANLEFLKKEHDVTIDMVNALYDFGQLQYSCGNYADASELLYRFRVLSTDNDKVSYATWGRLACEILTMNWESAMEELQKVRESI-DTRLANNPLAQLQHRTELVHWALFPLFNYDKAREPLLDLFFNAGFINTIQANS 265          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_AEDAE (Eukaryotic translation initiation factor 3 subunit E OS=Aedes aegypti GN=eIF3-S6 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.691e-49
Identity = 102/252 (40.48%), Postives = 160/252 (63.49%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSF---LQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQT 843
            MA +DLT +    LDRHL FPLLEFL ++ +Y    +LK  ++ ++KTNMVDY MDI + L   +++P+++ +RR  V+ +LK L+   AP++     L+NP+S +D ++      +  L   +    D I++  + AK+ +ECGNY  +  YLY    +   +++  L+ LWGK+AAEIL+ NW  ALE+L +L++ +D+     SP+  +Q R WL+HWS+ +FFNH  GR LII++F ++  YLNAIQT
Sbjct:    1 MAKFDLTAKNCQYLDRHLTFPLLEFLLQKDIYDQTSLLKFILQTVSKTNMVDYTMDIRERLNMGDELPEELSKRRANVLVKLKELQTEVAPLMKCMEELKNPDSMKDSKS-----IVHALQQEFDFKHDIIKSAQKLAKYLYECGNYRDSISYLYICLLVMEPADKNYLTVLWGKLAAEILVLNWPTALEDLTRLRDFIDNHN--FSPIEVLQQRTWLIHWSVLVFFNHAKGRDLIIEMFLYKPLYLNAIQT 245          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_PHANO (Eukaryotic translation initiation factor 3 subunit E OS=Phaeosphaeria nodorum GN=INT6 PE=3 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 4.820e-49
Identity = 97/245 (39.59%), Postives = 145/245 (59.18%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQTN 846
            Y L  ++ PNLDRHL++PLL F  +          K  +ELL  TNM D+   +++ +++ +D+P +   +R +V+ R   LEE  + I   L + N   +LR +D+  NL  L D + +  + +  LY++  FQ+ CG Y  AA+ LY++R L  N + R  A WGK+A E L  NWD A+EE+N+LKE + D + F +PL Q+Q R WL+HWSLF  FNH+  R  + D+F    Y+N IQTN
Sbjct:   15 YSLLPKLMPNLDRHLIYPLLNFSADEDAEQPLDQKKLLLELLKPTNMTDFVGQLYQDVHNLDDMPDEYKTKRDQVLQRRDKLEEETSKISGLLDDENVVTNLR-SDKVQNLAYLKDTHGVTVEMVNQLYEFGSFQYSCGVYPHAAELLYRFRVLVRNIQER-EATWGKLACEFLSVNWDSAIEEINKLKETI-DTRLFNNPLAQLQHRTWLIHWSLFPLFNHEPARESLTDMFFSPSYINTIQTN 256          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_YARLI (Eukaryotic translation initiation factor 3 subunit E OS=Yarrowia lipolytica GN=INT6 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.074e-48
Identity = 98/244 (40.16%), Postives = 144/244 (59.02%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHD-NGRTLIIDLFHQDKYLNAIQ 840
            YDLTQ+  P LDRHL++PLL+FL+ R +Y D ++L+ + +LL  TNM DY +++ K L   +    D+  ++  VV  L  LEE   P+   L+NP    +L+ N    N  +L  +Y +  +QI  LY++ +FQ+  G Y  A+D LY +RAL T+ E   SA WG+ A EIL   WD  LEEL +L++ VD       P  Q+  R+W++HWSLF FF +D  G+  + DLF    Y++ IQ
Sbjct:    3 YDLTQKTLPFLDRHLIYPLLQFLKGRGVYNDTELLQLEYDLLKDTNMTDYLVELSKELGQND---ADLQAKKENVVKTLAELEEATKPVFEVLENPEVVSELKENKTQ-NQALLTSKYGLSVEQINLLYKFGQFQYNAGRYQAASDILYHFRALSTDPELVASATWGRFACEILTSQWDSVLEELGKLRDSVDSRS--LDPQQQLHQRMWVIHWSLFPFFQNDTKGKDALCDLFFSSSYISTIQ 240          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_CULQU (Eukaryotic translation initiation factor 3 subunit E OS=Culex quinquefasciatus GN=eIF3-S6 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.124e-48
Identity = 101/252 (40.08%), Postives = 157/252 (62.30%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSF---LQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQT 843
            M+ +DLT +    LDRHL FPLLEFL ++ +Y    +LK  +E ++KTNMVDY MDI + L    ++P+++ +RR  V+ +LK L+   AP++     L+NP++ +D ++      +  L   +    D I +  + AK+ +ECGNY  +  YLY    +   +++  L+ LWGK+AAEIL  NW  ALE+L +L++ +D+     SP+  +Q R WL+HWS+ +FFNH  GR LII++F ++  YLNAIQT
Sbjct:    1 MSKFDLTAKNCQYLDRHLTFPLLEFLLQKNIYDQTSLLKFILETVSKTNMVDYTMDIRERLNMGNELPEELTKRRSNVLVKLKELQTEVAPLMKCMEELKNPDTMKDSKS-----IVHALQQEFDFKYDIIRSAQKLAKYLYECGNYRDSISYLYICLLVMEPTDKNYLNVLWGKLAAEILTLNWPTALEDLTRLRDFIDNHN--FSPIEVLQQRTWLIHWSVLVFFNHAKGRDLIIEMFLYKQLYLNAIQT 245          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EI3E1_DROWI (Eukaryotic translation initiation factor 3 subunit E-1 OS=Drosophila willistoni GN=eIF3-S6-1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.025e-47
Identity = 100/249 (40.16%), Postives = 155/249 (62.25%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQT 843
            MA +DL       LDRHL FPLLEFL  +++Y  +++L+  +E + KTNM+DY MD  K L  ++++P+++V+++ +V+A LK L+   API+         + ++  D    +  L   Y    + + + Y+ AK+ +ECGNY  +  YLY    +   S++  L  LWGK+AAEIL  NW+ ALE+L +L++ +D+  SF S L  +Q R WL+HWS+ +FFNH  GR LII++F ++  YLNAIQT
Sbjct:    1 MAQFDLVHINCQYLDRHLTFPLLEFLCGKEIYNQQELLEYILETVKKTNMIDYTMDTRKRLNLSQEMPEELVQQKADVLATLKQLQNEVAPIMKATDILKDGETMK--DSKTFVSALQRDYNFKMEHLYSAYKLAKYLYECGNYQESTSYLYFCLIVMAPSDKNYLDVLWGKLAAEILTLNWNTALEDLTRLRDYIDN-ASF-STLQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQT 245          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_USTMA (Eukaryotic translation initiation factor 3 subunit E OS=Ustilago maydis GN=INT6 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.454e-47
Identity = 97/263 (36.88%), Postives = 148/263 (56.27%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD-----PKSFTSPLNQ--------------MQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQT 843
            YDLTQ + P LDRHL  PLL  L    ++ +  I K++ EL   T+MVDYA+ +++  Y  +  P ++ ++R   +A    L      ++  +Q+P+    L+  D+  NLQ L ++Y +  +QI ALY+Y  FQF CGNY  A+ YLY +R L T+    +S+ WGK+A++IL+  W+ AL EL  L+E++D        S+  P                 ++ R WL+HW+LFIFFNH  GR  ++++F    YLN IQT
Sbjct:    5 YDLTQTLLPYLDRHLGLPLLSHLAGSGIFSETDIAKAQYELAKNTSMVDYALQLYEQAYPNQPAPAEIEKQRENAIALNDKLGSEVDHVLEVIQDPSVASALK-QDKAQNLQWLEEKYNLTSEQINALYRYGYFQFSCGNYGDASSYLYHFRVLSTDPVLTMSSHWGKLASDILVGEWEQALSELKLLREQLDSSAAHVTASYAQPSTSNGSSQNDDLTQEGLLKKRAWLLHWALFIFFNHPGGREQLVEMFLSPVYLNTIQT 266          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_CHAGB (Eukaryotic translation initiation factor 3 subunit E OS=Chaetomium globosum GN=INT6 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.451e-45
Identity = 95/263 (36.12%), Postives = 158/263 (60.08%), Query Frame = 1
Query:   88 NFNATMATYDLTQRIAPNLDRHLVFPLLEFL------QERQMYPDE----QILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQTN 846
            N +A ++ YDL  ++A NLDRH++FPLLEF       +E  +  DE    +I ++K  LL  +NM DY  +++  L   E+ P +  +++ +V ++L+ LE++ + I+  L+  +   +LR+ D+  NL+ L   +Q+  D + AL+     Q+ CGNY  A++ LY++R L T++++   A WG++A EIL  NW+ A+EEL +++E + D K   +PL Q+Q R  L HW+LF  FN +  R  I++LF    Y+N IQ N
Sbjct:    8 NGDAAVSDYDLMLKLAQNLDRHMIFPLLEFSAGQLVDEESGVVRDEAKAREITQAKYSLLKNSNMTDYVANLYCELAGVEEPPAEFADKKQKVFSQLQNLEQQTSKIIELLEREDVVNNLRS-DKVANLEFLKREHQVTMDMVNALFDLGNLQYSCGNYGDASEMLYRFRVLSTDNDKVAFATWGRLACEILTMNWESAMEELVKVRETI-DTKLSQNPLAQLQHRTALTHWALFPLFNFEKAREPILELFFNAGYINTIQAN 268          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_ANOGA (Eukaryotic translation initiation factor 3 subunit E OS=Anopheles gambiae GN=eIF3-S6 PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 3.233e-45
Identity = 103/252 (40.87%), Postives = 153/252 (60.71%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSF---LQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALC-TNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQT 843
            MA +DLT +    LDRHL FPLLEFL +++++    +LK  +E ++KTNMVDY  DI + L   +  P ++ + R  V+A LK L+   AP++     L+NP+S +D  +    + LQ   D      D I +  + AK+ +ECGNY+ +  YLY    +   N +  L  LWGK+A EIL  NW  ALE+L +L++ +++     SP+  +Q R WL+HWS+ +FFNH  GR LIID+F ++ +YLNAIQT
Sbjct:    1 MAKFDLTAKNCQYLDRHLTFPLLEFLLQKKVFDQTSLLKFILETVSKTNMVDYKHDIRERLAMDKVHPDELAQGRANVLATLKELQAEVAPLMKCMEELKNPDSTKD--SKSVIHALQQTLDY-----DIILSAQKLAKYLYECGNYNDSLSYLYVCMLVMEPNDKNYLGVLWGKLAVEILTLNWQTALEDLTRLRDFIENYN--FSPIQVLQQRAWLIHWSVLVFFNHGKGRDLIIDMFLYKPQYLNAIQT 243          
The following BLAST results are available for this feature:
BLAST of CN186276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_DROSE1.269e-4941.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_NEUCR2.164e-4938.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_AEDAE3.691e-4940.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_PHANO4.820e-4939.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_YARLI1.074e-4840.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CULQU3.124e-4840.08Eukaryotic translation initiation factor 3 subunit... [more]
EI3E1_DROWI2.025e-4740.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_USTMA3.454e-4736.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CHAGB1.451e-4536.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ANOGA3.233e-4540.87Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186276 ID=CN186276; Name=CN186276; organism=Citrus sinensis; type=EST; length=851bp
CAAACCTAAACACTAACGCTCGTCCTCAGTTTGCTCTTCGTCTACAGAAG
AACAGCAGCAGCAGACGCCGCTGCCGCCGAGGAACGAAATTTCAACGCGA
CAATGGCGACGTACGATTTGACACAGAGAATCGCGCCGAATCTGGACCGG
CATCTGGTGTTTCCGCTGCTGGAGTTTCTCCAAGAGCGGCAGATGTACCC
GGACGAGCAGATTCTGAAATCGAAGATAGAGCTCTTGAACAAGACGAACA
TGGTCGACTACGCGATGGACATCCACAAGAGCCTCTACCACACCGAAGAC
GTCCCGCAGGATATGGTCGAGCGGAGGGTCGAGGTCGTCGCTCGTTTGAA
GGCCCTGGAGGAGCGCGCCGCCCCGATCGTTTCGTTCTTGCAGAACCCTA
ACTCCTTTCAAGATTTGAGAGCTAATGACCAGCACTACAATTTGCAGATG
CTTAACGACCGTTACCAGATTGGCCCGGATCAGATCGAGGCGCTTTATCA
GTATGCCAAATTTCAGTTTGAATGTGGGAACTACTCTGGGGCTGCTGACT
ATCTGTACCAGTACAGGGCCTTGTGCACAAACAGTGAAAGGAGGCTGAGT
GCATTATGGGGAAAAATGGCGGCTGAGATATTGATGCAGAATTGGGATAT
TGCTCTTGAAGAACTTAATCAATTAAAGGAAAAAGTTGATGACCCAAAGA
GTTTCACTTCACCTTTAAATCAGATGCAGAGTAGGATATGGCTAATGCAT
TGGAGTCTCTTCATCTTTTTCAATCATGATAATGGGAGAACACTGATCAT
TGACTTGTTTCATCAGGATAAGTATCTAAATGCCATTCAAACCAATGCTC
C
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