CN186276

Overview
NameCN186276
Unique NameCN186276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_BRUMA (Eukaryotic translation initiation factor 3 subunit E OS=Brugia malayi GN=Bm1_11985 PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.229e-44
Identity = 94/250 (37.60%), Postives = 158/250 (63.20%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNP--NSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALC-TNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQ 840
            MA YDLT+R+AP  D HLV PLLEF++ R +Y  + ++K    +L KTNM+D  ++     Y   +VP+++ +R+VE++++ + L+ +  P+V  L++    +  D R    +  L+ +   + +  + +++L++YAKFQ+ECGNYS A+  L  YR +    +   LSAL+GK+A+EIL+Q W  A ++L +L+  +D    F + L  +Q R WLMHW+LF++FN+  GR  I++++ +Q  YLN IQ
Sbjct:    1 MAEYDLTKRMAPFFDLHLVIPLLEFIEPRSIYDHDSLIKVHRRVLLKTNMIDSVIE----TYPEGEVPKELEQRKVEILSQREKLKVKVDPVVEILESEPVKAMMDSRELTNNRILEYVTANHGLTEEMLDSLFRYAKFQYECGNYSAASLCLDYYRNIVPQQNPNYLSALYGKLASEILLQEWTHAKDDLTKLRTYIDF-NPFDTELESVQQRAWLMHWALFVYFNYPKGRDEIVEMYLNQQPYLNTIQ 245          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEEL (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis elegans GN=eif-3.E PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.454e-42
Identity = 90/256 (35.16%), Postives = 158/256 (61.72%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYN-----LQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-RRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQTNA 849
            M+T+DLTQR+AP LD HL+ PLLEF++ R +Y ++ + +   +LL KTNM+D  ++     Y+ + +P  +  ++ +++     L+ +   +V+ L+ P   +++  N++  +     L+ L   +    D ++ L++Y+KF +ECGNY+ A+  LY YR L   ++   L+AL+GK+A+EIL+Q W+ A ++L +L+  + D   F +    +  R WLMHW+LF+++N+  GR  II++F +Q  YLNAIQ  A
Sbjct:    1 MSTFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIE----TYNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIP-EVKEMMDNNRERDGNVRILEHLTQNHNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLRAYI-DANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLA 250          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_MONBE (Eukaryotic translation initiation factor 3 subunit E OS=Monosiga brevicollis GN=13685 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.220e-37
Identity = 85/250 (34.00%), Postives = 141/250 (56.40%), Query Frame = 1
Query:  103 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQTNA 849
            MA +DLTQ I  NLD HL+ PLL+   +  +Y +  + ++K+++L++T +++ A+++  +   TE   +D+  R   +    K  E++  P+    +N      + A     +L    + Y    +  + LY  +KF F+ G Y  A   LY YRA+ T+ + + +ALWGK+AA IL  NW  A E++  L E +D  K+  + + Q+Q R WL+HWSLF+FFN  +G   I+DLF +++   NA+QT A
Sbjct:    1 MAAHDLTQAICQNLDPHLILPLLDHCVDLDIYNEADLKRAKMQVLSRTRLIEQALELADA---TEK--KDLDARMRSISEEEKTWEKQLEPVFEMFENDEVLSIIEATKNKDSLLSELEPYGFTENTADLLYHGSKFYFDRGQYDLAHGLLYNYRAVSTDDKLKFTALWGKLAAAILSGNWQTAQEDMYLLLEYIDGGKNELTAVEQLQQRNWLLHWSLFVFFNQPDGPDGIVDLFMNKETCTNAMQTIA 245          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_DICDI (Eukaryotic translation initiation factor 3 subunit E OS=Dictyostelium discoideum GN=eif3e PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.548e-30
Identity = 78/291 (26.80%), Postives = 152/291 (52.23%), Query Frame = 1
Query:  112 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFL----QNPNSFQDLRANDQHYNLQMLNDRY----------------------------------------QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT---NSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFHQDKYLNAIQT 843
            YDLT++I   LD H++ PL+ +L++ Q Y + +I K+  ++L++T   DYA++ ++S+   +  P  +  ++ E+V  L  L+E+ + +  ++    Q     ++L+   +    +   D+                                         +I P+ ++++Y+++K  FE G Y  A ++L  +  L     N ++RLSALWG + ++IL  NW  A+ +++ L++++D   S  +P+ Q+  R WL+H +LF++F +   R+ ++DL  +DKYLNAIQT
Sbjct:    3 YDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMADILSQTGCCDYAINAYESIGR-DTAP--LQAKKQELVGELNKLKEQCSFVTQYIESKKQQKEQQKELKEQQKEQQKEKDTDKTTPTTTDETTTTTTTAPTTTTTTTTTTITPITVIPFSQLLEKITPEILDSIYRFSKLLFEIGQYGSAREHLEIFLQLSPTHQNKDKRLSALWGILESDILSLNWGQAVGDISPLQDQID---SNGTPVEQLGQRAWLIHRALFVYFYNPESRSSLVDLLLEDKYLNAIQT 287          
BLAST of CN186276 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEBR (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis briggsae GN=eif-3.E PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.039e-23
Identity = 54/126 (42.86%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  478 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-HQDKYLNAIQTNA 849
            D ++ L++Y+KF +ECGNY+ A+  LY YR L   ++   L+AL+GK+A+EIL+Q W+ A ++L +L+  +D    F +    +  R WLMHW+LF+++N+  GR  II++F +Q  YLNAIQ  A
Sbjct:    5 DMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLRAYID-ANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLA 129          
The following BLAST results are available for this feature:
BLAST of CN186276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_BRUMA1.229e-4437.60Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEEL7.454e-4235.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MONBE7.220e-3734.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DICDI8.548e-3026.80Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEBR2.039e-2342.86Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002K09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186276 ID=CN186276; Name=CN186276; organism=Citrus sinensis; type=EST; length=851bp
CAAACCTAAACACTAACGCTCGTCCTCAGTTTGCTCTTCGTCTACAGAAG
AACAGCAGCAGCAGACGCCGCTGCCGCCGAGGAACGAAATTTCAACGCGA
CAATGGCGACGTACGATTTGACACAGAGAATCGCGCCGAATCTGGACCGG
CATCTGGTGTTTCCGCTGCTGGAGTTTCTCCAAGAGCGGCAGATGTACCC
GGACGAGCAGATTCTGAAATCGAAGATAGAGCTCTTGAACAAGACGAACA
TGGTCGACTACGCGATGGACATCCACAAGAGCCTCTACCACACCGAAGAC
GTCCCGCAGGATATGGTCGAGCGGAGGGTCGAGGTCGTCGCTCGTTTGAA
GGCCCTGGAGGAGCGCGCCGCCCCGATCGTTTCGTTCTTGCAGAACCCTA
ACTCCTTTCAAGATTTGAGAGCTAATGACCAGCACTACAATTTGCAGATG
CTTAACGACCGTTACCAGATTGGCCCGGATCAGATCGAGGCGCTTTATCA
GTATGCCAAATTTCAGTTTGAATGTGGGAACTACTCTGGGGCTGCTGACT
ATCTGTACCAGTACAGGGCCTTGTGCACAAACAGTGAAAGGAGGCTGAGT
GCATTATGGGGAAAAATGGCGGCTGAGATATTGATGCAGAATTGGGATAT
TGCTCTTGAAGAACTTAATCAATTAAAGGAAAAAGTTGATGACCCAAAGA
GTTTCACTTCACCTTTAAATCAGATGCAGAGTAGGATATGGCTAATGCAT
TGGAGTCTCTTCATCTTTTTCAATCATGATAATGGGAGAACACTGATCAT
TGACTTGTTTCATCAGGATAAGTATCTAAATGCCATTCAAACCAATGCTC
C
back to top