CX674772

Overview
NameCX674772
Unique NameCX674772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: ACOC_RAT (Cytoplasmic aconitate hydratase OS=Rattus norvegicus GN=Aco1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.935e-26
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  497 EHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            ++PF  +   L     G+  KF++L  L D R  +LP+SIR+LLE+A+RNCD F VKK D+E I++W     K +E+PFKPARV+LQDFTGVPAVVD A MRDA
Sbjct:    2 KNPFAHLAEPLDPAQPGK--KFFNLNKLEDSRYGRLPFSIRVLLEAAVRNCDEFLVKKNDIENILNWSIMQHKSIEVPFKPARVILQDFTGVPAVVDFAAMRDA 103          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: ACOC_MOUSE (Cytoplasmic aconitate hydratase OS=Mus musculus GN=Aco1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.545e-25
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  497 EHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            ++PF  +   L     G+  +F++L  L D R  +LP+SIR+LLE+A+RNCD F VKK D+E I++W     K +E+PFKPARV+LQDFTGVPAVVD A MRDA
Sbjct:    2 KNPFAHLAEPLDAAQPGK--RFFNLNKLEDSRYGRLPFSIRVLLEAAVRNCDEFLVKKNDIENILNWNVMQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDA 103          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: ACOC_RABIT (Cytoplasmic aconitate hydratase OS=Oryctolagus cuniculus GN=ACO1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.231e-24
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  500 HPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            +PF  +   L     G+  KF++L  L+  R  +LP+SIR+LLE+A+RNCD F VKKED+E I++W  +    +E+PFKPARV+LQDFTGVP+VVD A MRDA
Sbjct:    3 NPFAYLAEPLDPAQPGK--KFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDIENILNWNVTQHMNIEVPFKPARVILQDFTGVPSVVDFAAMRDA 103          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: IREB2_MOUSE (Iron-responsive element-binding protein 2 OS=Mus musculus GN=Ireb2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 2
Query:  491 AAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            +A + F+ ++  L    G    KF+++P L   + + LPYSIR+LLE+A+RNCD F +KKEDV  I+DW+ +    VE+PF PARV+LQDFTG+PA+VD A MR+A
Sbjct:    5 SAGYTFEYLIETL---NGNSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKKEDVMNILDWK-TKQSNVEVPFFPARVVLQDFTGIPAMVDFAAMREA 106          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: IREB2_RAT (Iron-responsive element-binding protein 2 OS=Rattus norvegicus GN=Ireb2 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.224e-22
Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 2
Query:  491 AAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            +A + F+ ++  L    G    KF+++P L   + + LPYSIR+LLE+A+RNCD F +KKEDV  I+DW+ +    VE+PF PARV+LQDFTG+PA+VD A MR+A
Sbjct:    5 SAGYTFEYLIETL---NGSSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKKEDVINILDWK-TKQSNVEVPFFPARVVLQDFTGIPAMVDFAAMREA 106          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: IREB2_PIG (Iron-responsive element-binding protein 2 OS=Sus scrofa GN=IREB2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.088e-22
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  557 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            KF+++P L   + + LPYSIR+LLE+A+RNCD F +KKEDV  I+DW+ +    VE+PF P RVLLQDFTG+PA+VD A MR+A
Sbjct:   24 KFFNVPRLGGTKYDVLPYSIRVLLEAAVRNCDGFLMKKEDVMNILDWK-TKQSNVEVPFFPGRVLLQDFTGIPAMVDFAAMREA 106          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: ACON_BACSU (Aconitate hydratase OS=Bacillus subtilis GN=citB PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 6.717e-21
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  545 GEFGKFYSLPALNDP---RIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            G+   +YSL AL D    ++ KLPYSI++LLES +R  D F +KKE VE +  W  +  K +++PFKP+RV+LQDFTGVPAVVDLA +R A
Sbjct:   23 GKTYHYYSLKALEDSGIGKVSKLPYSIKVLLESVLRQVDGFVIKKEHVENLAKWGTAELKDIDVPFKPSRVILQDFTGVPAVVDLASLRKA 113          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: IREB2_HUMAN (Iron-responsive element-binding protein 2 OS=Homo sapiens GN=IREB2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.496e-20
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  557 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            KF+ +  L   + + LPYSIR+LLE+A+RNCD F +KKEDV  I+DW+ +    VE+PF PARVLLQDFTG+PA+VD A MR+A
Sbjct:   24 KFFDVSKLGT-KYDVLPYSIRVLLEAAVRNCDGFLMKKEDVMNILDWK-TKQSNVEVPFFPARVLLQDFTGIPAMVDFAAMREA 105          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: ACON_DEIRA (Aconitate hydratase OS=Deinococcus radiodurans GN=acn PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.334e-20
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  527 LPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            L  PG  +   FY+L  L    + +LP SI++LLES +R  +++ V++EDVE +  W  + P +VEIPFKPARV+LQDFTGVPAVVDLA MR A
Sbjct:   15 LQVPGSDKKLYFYNLNKLQGHDVSRLPVSIKVLLESVLREANDYDVRREDVETVAGWSATNP-EVEIPFKPARVILQDFTGVPAVVDLAAMRSA 107          
BLAST of CX674772 vs. ExPASy Swiss-Prot
Match: IREB2_CHICK (Iron-responsive element-binding protein 2 OS=Gallus gallus GN=IREB2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  557 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 808
            +FY++  L   + + LPYSIR+L ES+IRNCD F VK+ D   I+DW+ +    VE+PF PARV+LQDFTG+PA+VD A MR+A
Sbjct:   24 RFYNVSKLGGTKYDVLPYSIRVLFESSIRNCDGFLVKETDAMNILDWK-TKQNDVEVPFCPARVVLQDFTGIPAMVDFAAMREA 106          
The following BLAST results are available for this feature:
BLAST of CX674772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ACOC_RAT6.935e-2654.81Cytoplasmic aconitate hydratase OS=Rattus norvegic... [more]
ACOC_MOUSE1.545e-2553.85Cytoplasmic aconitate hydratase OS=Mus musculus GN... [more]
ACOC_RABIT2.231e-2453.40Cytoplasmic aconitate hydratase OS=Oryctolagus cun... [more]
IREB2_MOUSE9.373e-2350.00Iron-responsive element-binding protein 2 OS=Mus m... [more]
IREB2_RAT1.224e-2250.00Iron-responsive element-binding protein 2 OS=Rattu... [more]
IREB2_PIG2.088e-2258.33Iron-responsive element-binding protein 2 OS=Sus s... [more]
ACON_BACSU6.717e-2153.85Aconitate hydratase OS=Bacillus subtilis GN=citB P... [more]
IREB2_HUMAN1.496e-2058.33Iron-responsive element-binding protein 2 OS=Homo ... [more]
ACON_DEIRA3.334e-2053.19Aconitate hydratase OS=Deinococcus radiodurans GN=... [more]
IREB2_CHICK4.354e-2054.76Iron-responsive element-binding protein 2 OS=Gallu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_8F02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8F02-L4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674772 ID=CX674772; Name=CX674772; organism=Citrus sinensis; type=EST; length=809bp
GCCCTCTCACTCTCTCTCTTTCATCTAAAAATAACAGAACAGAAGACGCC
ATGAATTGAAAGAGCATTATTGCCATCAACCAACCAATAATCAAATCCAT
CTGAGACTCTGTACCAAATCCTTATCTCTTTTTTTGGCCTTTCCGTTTTG
TGTGAATGCGTGATCCAAGACATATACGTACCTCGCCATCGTCATGTATA
TAACAACCTCCACCTCAGCAGCTTCTTCAATCCTCAGAGCTTCTTCTAGG
TCACGATTCGTCTCTTCGCTATCTTCATTTAAGTCCTTACCTGCACGTTC
TCTTTCTCCTTCTCCTTCATCGTTGGTCTCTCAGCGATCTCTCGGCTTCG
CCTCGGCCGTTCGATCCTTCCGCTGCTCCGTCCCTCGCTGGAGCCACCGC
GTTGACTGGCGCTCTCCGCTTAGTCTTCGCGCTCAGATCAGAACCGTTGC
TCCTGCCATCGAACGGCTCGAACGCGCCTTTGCTACTATGGCTGCTGAAC
ATCCATTCAAGGAGATCTTGACCGCTCTTCCAAAGCCAGGAGGTGGCGAG
TTTGGAAAGTTCTATAGCCTTCCTGCACTCAATGATCCAAGAATTGAGAA
GCTGCCATACTCTATCAGAATCCTGCTTGAATCTGCTATTCGTAATTGTG
ACAACTTTCAAGTTAAGAAGGAAGATGTCGAGAAAATTATTGACTGGGAA
AATTCTGCACCAAAGCAAGTTGAAATTCCCTTCAAGCCTGCTCGTGTATT
GTTGCAGGATTTTACTGGAGTACCAGCCGTGGTTGACCTTGCCTGCATGC
GTGATGCTA
back to top