EY665447

Overview
NameEY665447
Unique NameEY665447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 138          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 138          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 137          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 138          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 136          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 137          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  226 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            G +SV+ S  +    P+R ++   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   50 GRKSVAASIDSPWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 149          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 136          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q
Sbjct:   62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQ 133          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  232 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYTAG 504
            R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L K G++      +W+  G
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTG 138          
The following BLAST results are available for this feature:
BLAST of EY665447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB27_TOBAC2.987e-1449.30Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC2.987e-1449.30Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL2.987e-1449.30Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC2.987e-1449.30Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_TOBAC2.987e-1449.30Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_TOBAC2.987e-1449.30Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2A_PYRPY3.901e-1442.57Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE5.095e-1444.71Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_MAIZE5.095e-1448.61Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB13_SOLLC5.095e-1443.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665447 ID=EY665447; Name=EY665447; organism=Citrus sinensis; type=EST; length=857bp
CTGTTCACTTCCAATTGTATCCTTTTTCACACGCACACAAACGCCAGTCA
TAATTTTGCTGACATCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCTGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCAAGAGTAACTTCACAGACACCACCACCCTGTTCATTGTTGAG
ATGATATTCATAGGCTGGGGAGAGGGGAAGAGGGGGGGCCGACATTATAA
AGCCAGGCTGTGTGAACACTGGACCCGATCTTCCCCAAAAACAAGCTCAC
CGGCACCGAATGTTGGGTAACCCAGGGGGGGCTTTGGTTTGACCCCATTG
GGTTGGGGATCCGGGTTCCCCCGAAAAAGGTAATGGAGCTTGAGGACTAA
GGGAGAATCAAAAAAGGGAAAAATTGGGTTATTGTGGGTGGGGATGGGGG
GGCTTGGGTTCCCACACAATTAAACTTGGGGCCCCGGGCCCCCTTTGAAA
ATTCTCA
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