EY665447

Overview
NameEY665447
Unique NameEY665447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  265 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG Q
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQ 124          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 138          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W  AG Q
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQ 138          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            PP +L G  PGD+G+D  GL +DPET   N + E++H  WAMLGA G   PELL++ G+      W+ AG Q
Sbjct:    6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQ 77          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQ 139          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQ 140          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQ 99          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + GI      W+ AG Q
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQ 138          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 135          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 137          
The following BLAST results are available for this feature:
BLAST of EY665447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2_CHLRE2.529e-1344.19Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP2.529e-1347.89Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_PETSP2.529e-1347.89Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_CUCSA2.529e-1347.22Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB28_PEA3.302e-1347.89Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA3.302e-1347.89Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_PEA3.302e-1347.89Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_PETSP4.313e-1347.89Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_APIGR4.313e-1347.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH4.313e-1347.89Chlorophyll a-b binding protein 2, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665447 ID=EY665447; Name=EY665447; organism=Citrus sinensis; type=EST; length=857bp
CTGTTCACTTCCAATTGTATCCTTTTTCACACGCACACAAACGCCAGTCA
TAATTTTGCTGACATCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCTGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCAAGAGTAACTTCACAGACACCACCACCCTGTTCATTGTTGAG
ATGATATTCATAGGCTGGGGAGAGGGGAAGAGGGGGGGCCGACATTATAA
AGCCAGGCTGTGTGAACACTGGACCCGATCTTCCCCAAAAACAAGCTCAC
CGGCACCGAATGTTGGGTAACCCAGGGGGGGCTTTGGTTTGACCCCATTG
GGTTGGGGATCCGGGTTCCCCCGAAAAAGGTAATGGAGCTTGAGGACTAA
GGGAGAATCAAAAAAGGGAAAAATTGGGTTATTGTGGGTGGGGATGGGGG
GGCTTGGGTTCCCACACAATTAAACTTGGGGCCCCGGGCCCCCTTTGAAA
ATTCTCA
back to top