CX043274

Overview
NameCX043274
Unique NameCX043274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043274 vs. ExPASy Swiss-Prot
Match: METF_BUCBP (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=metF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.244e-22
Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 3
Query:   57 ALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAI 554
            A+DL+K ++S     F I+VA YPE HP+ +       N  Y  D++ LK+KV+AGA   ITQ F++ D FL+F + C +  IT  IVPGI PI+N+K  L+ +      IP  +      + ++    +  G  +  +M K + + GI++ H YTLN  + + AI
Sbjct:  133 AVDLIKLLKSIAN--FEISVAAYPEVHPEAV-------NAKY--DIINLKRKVEAGATRAITQFFFNIDCFLRFRDLCVKNNITIDIVPGIFPISNFKQLLKFSSVSNVSIPKWLCCMFHGLDNDLNTSRIIGSSIAIDMVKVLYSEGIRSFHFYTLNKSEISFAI 287          
BLAST of CX043274 vs. ExPASy Swiss-Prot
Match: METF_BUCAI (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metF PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.837e-21
Identity = 60/172 (34.88%), Postives = 92/172 (53.49%), Query Frame = 3
Query:   57 ALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 572
            A+DLV  ++      F I+VA YPE HP++         ++ +SD+L LKKKVDAGA   ITQ F++ + +L+F ++C +  I   I+PGI+P+ N++   R +     KIP  +      + D+    K  G  +  +M KK+   G+K  H YTLN      +I   LGL
Sbjct:  132 AVDLVLLLKKIAD--FDISVAAYPELHPES---------KNVKSDILNLKKKVDAGASRAITQFFFNIESYLRFRDNCIKNKINIDIIPGILPVCNFQKLKRFSSMTNVKIPKWMLDMFNGLDDDIFTQKIIGSSIAIDMVKKLSCEGVKNFHFYTLNQSDITYSICHILGL 292          
BLAST of CX043274 vs. ExPASy Swiss-Prot
Match: METF_STRLI (5,10-methylenetetrahydrofolate reductase OS=Streptomyces lividans GN=metF PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.652e-20
Identity = 61/191 (31.94%), Postives = 94/191 (49.21%), Query Frame = 3
Query:    3 DPPHGQDK-FVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 572
            DPP   +  ++    G   A +LV+ I+ + GD F + VA +PE HP          +  + +D+     K  AGAD  ITQ+F+  D +L+  +     G   P++P +MP+ + K   R+        PAE+   +   KD+  AV++ GI    E C ++LA G+  LH  TLN   + L I  NLGL
Sbjct:  122 DPPGDPNADWIAHPEGLTYAAELVRLIKES-GD-FCVGVAAFPEMHP---------RSADWDTDVTNFVDKCRAGADYAITQMFFQPDSYLRLRDRVAAAGCATPVIPEVMPVTSVKMLERLPKLSNASFPAELKERILTAKDDPAAVRSIGIEFATEFCARLLAEGVPGLHFITLNNSTATLEIYENLGL 301          
BLAST of CX043274 vs. ExPASy Swiss-Prot
Match: METF_BUCAP (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metF PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.652e-20
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 3
Query:   57 ALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL 572
            ALDLV  ++      F I+VA YPE HP++         ++ QSD+L LKKK DAGA+  ITQ F++ + +L+F ++C +  I   I+PGI+PI N++   + +      IP  +      + ++ E  K  G ++   + K +L  G+K  H YTLN      +I    GL
Sbjct:  132 ALDLVVLLKKIAD--FDISVAAYPEIHPES---------KNAQSDILNLKKKADAGANRAITQFFFNVESYLRFRDNCIKNNINIEIIPGILPIYNFEQLKKFSSMTNVSIPKWMFEMFNGLDEDLETQKIIGSNIVINIVKTLLYEGVKNFHFYTLNKSDVIYSICHMFGL 292          
The following BLAST results are available for this feature:
BLAST of CX043274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
METF_BUCBP8.244e-2235.545,10-methylenetetrahydrofolate reductase OS=Buchne... [more]
METF_BUCAI1.837e-2134.885,10-methylenetetrahydrofolate reductase OS=Buchne... [more]
METF_STRLI2.652e-2031.945,10-methylenetetrahydrofolate reductase OS=Strept... [more]
METF_BUCAP2.652e-2033.725,10-methylenetetrahydrofolate reductase OS=Buchne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A05-B10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043274 ID=CX043274; Name=CX043274; organism=Citrus sinensis; type=EST; length=829bp
GCGATCCTCCTCACGGTCAGGATAAGTTCGTTCAGATCCAGGGTGGCTTC
GCCTGCGCTCTTGATCTCGTGAAACATATTAGGTCTGCTTATGGTGATTA
CTTTGGCATCACAGTTGCTGGTTACCCAGAGGGACATCCGGATACCATTG
GACCTGATGGCGTGGCCAGTAATGAATCATATCAAAGTGATCTTCTTTAT
CTGAAGAAAAAGGTGGATGCTGGTGCAGATCTAATTATCACTCAACTATT
CTATGATACTGACATGTTTCTTAAGTTTGTGAATGACTGTCGCCAAATTG
GAATTACCTGCCCCATTGTTCCTGGAATTATGCCCATTAATAACTATAAG
GGTTTCTTGCGCATGACTGGCTTTTGCAAAACAAAGATACCAGCTGAGAT
TACTGCTGCCTTGGAGCCTATAAAGGACAATGAAGAAGCTGTTAAAGCCT
ATGGAATTCACCTTGGAGCTGAAATGTGCAAGAAAATTTTAGCTCATGGG
ATTAAGACTCTGCATCTTTATACTCTAAACATGGAGAAATCTGCATTAGC
TATATTATTGAATCTTGGTTTGATTGAAGAGTCCAAAATTTCCAGATCCT
TACCCTGGAGACCCCCTACTAATGTTTTCCGCGTTAAGGAAGATGTTCGT
CCAATATTTTGGGCTAATCGTCCAAAGAGCTACTTATCAAGGACAGTTGG
TTGGGACCAGTATCCACGTGGACGATGGGGTGATTCTCGTAACCCATCAT
ATGGTGCTTTATCTGACCATCAGTTTATGCGGCCTCGTTCACGTGACAAG
AAACTTCATGAAGAATGGGCTGTCCCCTT
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