CV885281

Overview
NameCV885281
Unique NameCV885281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS2_RAT (Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 68/236 (28.81%), Postives = 107/236 (45.34%), Query Frame = 1
Query:  199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAV 825
            EE++ HN   D W+ I  KVY+VT+W+++HPGG   + + +G+D TDAF A+H       LD  F G F++   +               S+I++D+R L        +F K  H          L F +++  ++  ES+ W   ++ G+G         +L     Q+ ++ HD GH  V     +N I        L G S  WW   H  HH   N    DPD++ + VF +
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESIAWFILSYFGNGWIPTVITAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHIVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSLHVFVL 241          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS2_MOUSE (Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 66/236 (27.97%), Postives = 106/236 (44.92%), Query Frame = 1
Query:  199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCES----VWAHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAV 825
            EE++ HN   D W+ I  KVY+VT+W+++HPGG   + + +G+D TDAF A+H       LD  F G F++   +               S+I++D+R L        +F K  H          L F +++  ++  ES    + ++ G+G         +L     Q+ ++ HD GH  V     +N +        L G S  WW   H  HH   N    DPD++ + VF +
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHVVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSLHVFVL 241          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS3_MOUSE (Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 58/216 (26.85%), Postives = 100/216 (46.30%), Query Frame = 1
Query:  199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819
            E++R H+   D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H    +  ++L  L  G    +       + +++ +D+R L        +FE      +  L  +  M ++    +      W + + + ++L     Q   + HD GH  + T  ++N +AQ      L G S  WW + H  HH   N    DPD+   PVF
Sbjct:   30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVF 245          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS3_HUMAN (Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 1
Query:  199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDFEV-SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLG-SGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819
            E++R H++  D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H    +  ++L  L  G        QD  + +++ +D+R L+       +F+      +  L  +  M V+    +      W     +  +L     QS  + HD GH  +     +N +AQ      L G S  WW + H  HH   N    DPD+   PVF
Sbjct:   26 EQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQAAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQKFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVF 241          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS1_MOUSE (Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.963e-18
Identity = 62/245 (25.31%), Postives = 113/245 (46.12%), Query Frame = 1
Query:  127 LPPQHFPIFQSAALMEAEKKYITAEELRTHNKAE-DLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVSE---ISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819
            + P   P    A+    + +Y T EE+   +  E + W+ I  KVY++++++++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE ++   ++ ++R L     + G+ +        ++    L  VA    + ++G     S+   +   +LL  +  Q+ ++ HD GH  V  +  +N +        L G   +WW   H  HH   N    DPD+   P+F
Sbjct:    1 MAPDPVPTPGPASAQLRQTRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDATDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLVYLLHILLLDVAAWLTLWIFGT----SLVPFILCAVLLSTVQAQAGWLQHDFGHLSVFGTSTWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPLF 241          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS3_RAT (Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fads3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 58/216 (26.85%), Postives = 100/216 (46.30%), Query Frame = 1
Query:  199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819
            E++R H+   D W+ I+ +VYD++ WA++HPGG   + + + +D TDAF A+H    +  ++L  L  G    +       + +++ +D+R L        +FE      +  L  +  M ++    V      W + + + ++L     Q   + HD GH  +    ++N +AQ      L G S  WW + H  HH   N    DPD+   PVF
Sbjct:   30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHSAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLLVYLLGPGWVSSVLAALILAISQAQCWCLQHDLGHASIFPKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVF 245          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS1_RAT (Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 59/228 (25.88%), Postives = 108/228 (47.37%), Query Frame = 1
Query:  178 EKKYITAEELRTHNKAE-DLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVSE---ISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819
            + +Y T EE+   +  E + W+ I  KVY++++++++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE ++   ++ ++R L     + G+ +        ++    L  VA    + ++G     S+       +LL  +  Q+ ++ HD GH  V ++  +N +        L G   +WW   H  HH   N    DPD+   P+F
Sbjct:   18 QMRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDATDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLFYLLHILLLDVAAWLTLWIFGT----SLVPFTLCAVLLSTVQAQAGWLQHDFGHLSVFSTSTWNHLVHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPLF 241          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FAD2L_HUMAN (Fatty acid desaturase 2-like protein OS=Homo sapiens PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15
Identity = 64/222 (28.83%), Postives = 96/222 (43.24%), Query Frame = 1
Query:  202 ELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP--GTAWQYLDKLFTGYFV------QDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSG----MLLGFL----WIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819
            E++ HN   D  + I  KVY+V+ WA +HPGG   L + AG+D  D F A HP       YL  L  G         +  + S++ KD++ L+       MF          L    L FV ++   +    +  H GSG    M + FL       S+++ HD+GH  +    K+N +        L G+S   W + H   H+  N    DPD+   P+F
Sbjct:   63 EIQRHNHEADQLV-INCKVYNVSSWADRHPGGHQVLNHCAGEDAMDVFRAMHPELDIVQLYLKPLLIGELAPGEPSQERHKNSQLVKDFQELWSIAEAMNMFHAN-------LGFFFLHFVQILILEVLAWLIVYHFGSGWPVTMFISFLLTISQASSSFLQHDAGHLSIFRKSKWNHVVHKFVMCHLKGLSADRWNYWHFEQHVKPNIYPKDPDIDTDPLF 276          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14
Identity = 63/220 (28.64%), Postives = 97/220 (44.09%), Query Frame = 1
Query:  184 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQY--LDKLFTGY--------FVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVY--GVLCCESVWAHLGSGMLLGFL-WIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH-NAHHIACNSLDYDPDL 801
            K  T +E+  HN+  DLWI + GKVY++T+W   HPGG+  LL  AG+D T+ F +YHP T   Y  + +   GY        +V+  E     K   R + + + Q   + K  V       +  +F+ V Y       +  W +    +L G    +   +  HD+ H  +  +P   KI    + +   G S   W   H   HH+  N  + DPDL
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISSYEHPKYVEKSEFYSTLKQRVRKHFQTSSQ---DPKVSVGVFTRMVLIYLFLFVTYYLSQFSTDRFWLNCIFAVLYGVANSLFGLHTMHDACHTAITHNPMTWKILG-ATFDLFAGASFYAWCHQHVIGHHLYTNVRNADPDL 228          
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.115e-13
Identity = 65/220 (29.55%), Postives = 95/220 (43.18%), Query Frame = 1
Query:  184 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP--GTAWQYLDKLFTGY--------FVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY---VGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH-NAHHIACNSLDYDPDL 801
            K  +  EL  HN   D W+++ GKVYD+T W   HPGG   LL  AG+DVT+ F +YHP        L     GY        FVQ  +  +  K+  R + +   Q   + +  V+  +   +  + V V Y +    S   +L   + + +    S +   + HDS H  +   P   K     S + +TG S   W   H   HHI  N  + DPDL
Sbjct:   14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKHFKATDQ---DPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHMMHDSCHAAISHYPGVWKWMG-ASFDFVTGASFLSWCHQHVIGHHIYTNVRNADPDL 229          
The following BLAST results are available for this feature:
BLAST of CV885281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FADS2_RAT2.319e-1928.81Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fa... [more]
FADS2_MOUSE5.167e-1927.97Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 P... [more]
FADS3_MOUSE6.748e-1926.85Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 P... [more]
FADS3_HUMAN1.151e-1827.78Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 P... [more]
FADS1_MOUSE1.963e-1825.31Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 P... [more]
FADS3_RAT2.564e-1826.85Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fa... [more]
FADS1_RAT4.374e-1825.88Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fa... [more]
FAD2L_HUMAN1.191e-1528.83Fatty acid desaturase 2-like protein OS=Homo sapie... [more]
FAD5B_DICDI3.832e-1428.64Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
FAD5A_DICDI1.115e-1329.55Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013G04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885281 ID=CV885281; Name=CV885281; organism=Citrus sinensis; type=EST; length=847bp
CGGAAATAAAATAGAGATCTCAAAACCGAAAGCAAACCAAATCATCACAT
CCCTTGCTATTTCACTTTGAGCAAAACTTGCGGGATTTTCTTGATTTGAT
TTTGCTTCCCAGGTGGCATAACCTATCTTCCCCCACAACACTTTCCAATT
TTTCAATCTGCTGCCTTAATGGAGGCCGAGAAAAAATACATAACGGCTGA
AGAGCTTAGAACCCACAACAAGGCAGAAGATTTGTGGATCTCTATACAGG
GGAAAGTTTACGACGTTACAGAATGGGCAAAACAACATCCTGGCGGCGAC
GTTCCGCTCTTGAATTTGGCTGGCCAAGATGTAACCGATGCGTTTATAGC
GTATCATCCAGGAACCGCTTGGCAATATCTTGATAAACTTTTTACAGGCT
ATTTTGTTCAAGATTTCGAAGTATCTGAAATCTCAAAAGATTACAGGAGA
CTGTACATTGAGTTTGCCAAACAGGGTATGTTTGAAAAGAAACAACACGT
GGCATCCTGTGCCCTTACATGTGTAGCATTGATGTTTGTTGTTGTGGTTT
ATGGCGTTTTGTGCTGTGAGAGCGTCTGGGCTCATTTGGGTTCAGGCATG
TTGTTGGGGTTTCTTTGGATTCAAAGTGCTTATGTTGGTCACGATTCCGG
GCATTATCAGGTTATGACAAGTCCTAAGTTTAACAAAATTGCTCAGCTTA
TTTCAGGAAATTGTTTAACAGGAATCAGCATTGCTTGGTGGAAGTGGACT
CACAATGCCCACCACATTGCTTGCAACAGCCTTGATTACGATCCAGATCT
TCAACACATCCCAGTTTTTGCGGTATCTACGCGTTTATTTAATTCAA
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