CV885281
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS2_RAT (Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19 Identity = 68/236 (28.81%), Postives = 107/236 (45.34%), Query Frame = 1 Query: 199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAV 825 EE++ HN D W+ I KVY+VT+W+++HPGG + + +G+D TDAF A+H LD F G F++ + S+I++D+R L +F K H L F +++ ++ ES+ W ++ G+G +L Q+ ++ HD GH V +N I L G S WW H HH N DPD++ + VF + Sbjct: 24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESIAWFILSYFGNGWIPTVITAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHIVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSLHVFVL 241
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS2_MOUSE (Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19 Identity = 66/236 (27.97%), Postives = 106/236 (44.92%), Query Frame = 1 Query: 199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCES----VWAHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAV 825 EE++ HN D W+ I KVY+VT+W+++HPGG + + +G+D TDAF A+H LD F G F++ + S+I++D+R L +F K H L F +++ ++ ES + ++ G+G +L Q+ ++ HD GH V +N + L G S WW H HH N DPD++ + VF + Sbjct: 24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHVVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSLHVFVL 241
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS3_MOUSE (Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19 Identity = 58/216 (26.85%), Postives = 100/216 (46.30%), Query Frame = 1 Query: 199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819 E++R H+ D W+ I+ +VYD++ WA++HPGG + + +D TDAF A+H + ++L L G + + +++ +D+R L +FE + L + M ++ + W + + + ++L Q + HD GH + T ++N +AQ L G S WW + H HH N DPD+ PVF Sbjct: 30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVF 245
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS3_HUMAN (Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18 Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 1 Query: 199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDFEV-SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLG-SGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819 E++R H++ D W+ I+ +VYD++ WA++HPGG + + +D TDAF A+H + ++L L G QD + +++ +D+R L+ +F+ + L + M V+ + W + +L QS + HD GH + +N +AQ L G S WW + H HH N DPD+ PVF Sbjct: 26 EQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQAAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQKFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVF 241
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS1_MOUSE (Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.963e-18 Identity = 62/245 (25.31%), Postives = 113/245 (46.12%), Query Frame = 1 Query: 127 LPPQHFPIFQSAALMEAEKKYITAEELRTHNKAE-DLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVSE---ISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819 + P P A+ + +Y T EE+ + E + W+ I KVY++++++++HPGG + + AGQD TD F+A+H G +Y++ L G + FE ++ ++ ++R L + G+ + ++ L VA + ++G S+ + +LL + Q+ ++ HD GH V + +N + L G +WW H HH N DPD+ P+F Sbjct: 1 MAPDPVPTPGPASAQLRQTRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDATDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLVYLLHILLLDVAAWLTLWIFGT----SLVPFILCAVLLSTVQAQAGWLQHDFGHLSVFGTSTWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPLF 241
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS3_RAT (Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fads3 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18 Identity = 58/216 (26.85%), Postives = 100/216 (46.30%), Query Frame = 1 Query: 199 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819 E++R H+ D W+ I+ +VYD++ WA++HPGG + + + +D TDAF A+H + ++L L G + + +++ +D+R L +FE + L + M ++ V W + + + ++L Q + HD GH + ++N +AQ L G S WW + H HH N DPD+ PVF Sbjct: 30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHSAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLLVYLLGPGWVSSVLAALILAISQAQCWCLQHDLGHASIFPKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVF 245
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FADS1_RAT (Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fads1 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18 Identity = 59/228 (25.88%), Postives = 108/228 (47.37%), Query Frame = 1 Query: 178 EKKYITAEELRTHNKAE-DLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVSE---ISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819 + +Y T EE+ + E + W+ I KVY++++++++HPGG + + AGQD TD F+A+H G +Y++ L G + FE ++ ++ ++R L + G+ + ++ L VA + ++G S+ +LL + Q+ ++ HD GH V ++ +N + L G +WW H HH N DPD+ P+F Sbjct: 18 QMRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDATDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLFYLLHILLLDVAAWLTLWIFGT----SLVPFTLCAVLLSTVQAQAGWLQHDFGHLSVFSTSTWNHLVHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPLF 241
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FAD2L_HUMAN (Fatty acid desaturase 2-like protein OS=Homo sapiens PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15 Identity = 64/222 (28.83%), Postives = 96/222 (43.24%), Query Frame = 1 Query: 202 ELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP--GTAWQYLDKLFTGYFV------QDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSG----MLLGFL----WIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVF 819 E++ HN D + I KVY+V+ WA +HPGG L + AG+D D F A HP YL L G + + S++ KD++ L+ MF L L FV ++ + + H GSG M + FL S+++ HD+GH + K+N + L G+S W + H H+ N DPD+ P+F Sbjct: 63 EIQRHNHEADQLV-INCKVYNVSSWADRHPGGHQVLNHCAGEDAMDVFRAMHPELDIVQLYLKPLLIGELAPGEPSQERHKNSQLVKDFQELWSIAEAMNMFHAN-------LGFFFLHFVQILILEVLAWLIVYHFGSGWPVTMFISFLLTISQASSSFLQHDAGHLSIFRKSKWNHVVHKFVMCHLKGLSADRWNYWHFEQHVKPNIYPKDPDIDTDPLF 276
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14 Identity = 63/220 (28.64%), Postives = 97/220 (44.09%), Query Frame = 1 Query: 184 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQY--LDKLFTGY--------FVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVY--GVLCCESVWAHLGSGMLLGFL-WIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH-NAHHIACNSLDYDPDL 801 K T +E+ HN+ DLWI + GKVY++T+W HPGG+ LL AG+D T+ F +YHP T Y + + GY +V+ E K R + + + Q + K V + +F+ V Y + W + +L G + + HD+ H + +P KI + + G S W H HH+ N + DPDL Sbjct: 13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISSYEHPKYVEKSEFYSTLKQRVRKHFQTSSQ---DPKVSVGVFTRMVLIYLFLFVTYYLSQFSTDRFWLNCIFAVLYGVANSLFGLHTMHDACHTAITHNPMTWKILG-ATFDLFAGASFYAWCHQHVIGHHLYTNVRNADPDL 228
BLAST of CV885281 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.115e-13 Identity = 65/220 (29.55%), Postives = 95/220 (43.18%), Query Frame = 1 Query: 184 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP--GTAWQYLDKLFTGY--------FVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY---VGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH-NAHHIACNSLDYDPDL 801 K + EL HN D W+++ GKVYD+T W HPGG LL AG+DVT+ F +YHP L GY FVQ + + K+ R + + Q + + V+ + + + V V Y + S +L + + + S + + HDS H + P K S + +TG S W H HHI N + DPDL Sbjct: 14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKHFKATDQ---DPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHMMHDSCHAAISHYPGVWKWMG-ASFDFVTGASFLSWCHQHVIGHHIYTNVRNADPDL 229 The following BLAST results are available for this feature:
BLAST of CV885281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885281 ID=CV885281; Name=CV885281; organism=Citrus sinensis; type=EST; length=847bpback to top |