CV885188

Overview
NameCV885188
Unique NameCV885188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  484 GLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPDETLGLT 876
            GL P   L ++  D+  G+ G D ++ QL       + +F N   PPA K  I+++P V + E HV     C VCK+ + L    R++PC H++H  CI+PWL   +SCP+CR+ L       G+N    P    G++
Sbjct:  168 GLGPWGVLHSNPMDYAWGANGLDAIITQL-------LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL------TGQNTATDPPGLAGVS 292          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  598 PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            PPA+KA +ES+P   I  S    E  C VC   F+      EMPC H++H  CILPWLS  NSCPLCR ELP +
Sbjct:   64 PPAAKAVVESLPRTVIRSSKA--ELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTD 135          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  598 PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            PPA+K A+E++P   I  S    E  C VC   F+    A EMPC H++H  CILPWLS  NSCPLCR ELP +
Sbjct:   52 PPAAKTAVENLPRTVIRGSQA--ELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTD 123          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  529 SGFDRVLDQLTQLDFNGVT-RFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            +G++ +L  L + D  G   R   PPA+K+AIE++    ++ S       CAVCK+   +    +++PC H YHG+CI+PWL  RNSCP+CR +L  +
Sbjct:  207 AGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETD 304          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  598 PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            PPA+KA +ES+P   I+ +    +  C VC   F+      EMPC H++H  CILPWLS  NSCPLCR ELP +
Sbjct:   64 PPAAKAVVESLPRTVISSAKA--DLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTD 135          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  598 PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            PPA+K  +E++P   I  S    E  C VC   F+    A EMPC H++H  CILPWLS  NSCPLCR ELP +
Sbjct:   52 PPAAKTVVENLPRTVIRGSQA--ELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTD 123          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  574 NGVTRFVN-PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            NG+   +  P ASK AI  +PV  I +S    +  C+VCKEP +   + R +PCKH +H ECIL WL   NSCPLCR EL  +
Sbjct:   35 NGIDMEIEVPEASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETD 117          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: PJA2_MOUSE (E3 ubiquitin-protein ligase Praja2 OS=Mus musculus GN=Pja2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.707e-12
Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 1
Query:  595 NPPASKAAIESMPVVTIAESHVA--KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPD 858
            NPPASK +I+ +P   + E H A  +E  C +C   +  +  A E+PC H +H  C+  WL    +CP+CRR  P    D        PD
Sbjct:  604 NPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSDPD 693          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: PJA2_RAT (E3 ubiquitin-protein ligase Praja2 OS=Rattus norvegicus GN=Pja2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.229e-12
Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 1
Query:  595 NPPASKAAIESMPVVTIAESHVA--KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPD 858
            NPPASK +I+ +P   + E H A  +E  C +C   +  +  A E+PC H +H  C+  WL    +CP+CRR  P    D        PD
Sbjct:  604 NPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSEPD 693          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: PJA2_PONAB (E3 ubiquitin-protein ligase Praja2 OS=Pongo abelii GN=PJA2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 31/90 (34.44%), Postives = 45/90 (50.00%), Query Frame = 1
Query:  595 NPPASKAAIESMPVVTIAESHVA--KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPD 858
            NPPASK +I+ +P   + E H A  +E  C +C   +  +  A E+PC H +H  C+  WL    +CP+CRR  P    +        PD
Sbjct:  605 NPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIEASAAPSSEPD 694          
The following BLAST results are available for this feature:
BLAST of CV885188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RN126_BOVIN3.926e-1734.06RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN181_RAT1.263e-1551.35E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_BOVIN1.263e-1551.35E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
CIP8_ARATH1.263e-1538.78E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_MOUSE2.154e-1548.65E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_HUMAN6.268e-1550.00E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
RN181_DROME1.824e-1446.99E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]
PJA2_MOUSE1.707e-1235.56E3 ubiquitin-protein ligase Praja2 OS=Mus musculus... [more]
PJA2_RAT2.229e-1235.56E3 ubiquitin-protein ligase Praja2 OS=Rattus norve... [more]
PJA2_PONAB1.106e-1134.44E3 ubiquitin-protein ligase Praja2 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885188 ID=CV885188; Name=CV885188; organism=Citrus sinensis; type=EST; length=878bp
TTAGGGTTTTTGAATTGCTGATTCTTTTGTTCAGTCTATAAAAATTGAAC
ATTAGATCTGAAGGGTTTATCATTTCTGAGTGAAAAATAGAAACTTTCTT
CTGTTCTTTAATCTATGTCTTCAATCGGATTGTCGTACTGGTGCTACCGC
TGCAACCGGATCATCCGGATTCAGTCCAGGACTGAAGACGCAATCGTTTG
CCCCGATTGCCATACCGGCTTCATCGAACAGATTGAAACCATTCAGCGAC
CTTCGAACGAGAGATATCCCGCCGCCGAAATGTACTTAGAAGACACCCAA
AACCCGGAGACATTCCCGACCACGAGGTTTGGTCGGACTCGGAGAAACGG
CGGAGACCGATCCCCTTTCAACCCTGTCATCGTCCTCCGTGGGCCCCAGA
CCCCTGATTCAGGCGGTGGAAATGAAGGAACTGCCATGGAGAGAGGAAAC
TTCGAGCTTTTTTATGACGACGCTACCGGGGCGGGTCTTAGGCCATTACC
CGCGAGCATGTCGGACTTTTTGATGGGTTCGGGTTTTGACCGGGTCCTCG
ACCAGTTAACACAGTTAGATTTTAACGGGGTGACGAGGTTCGTGAACCCT
CCGGCTTCAAAGGCTGCGATCGAGTCAATGCCGGTGGTCACAATTGCAGA
AAGCCACGTGGCGAAGGAATCGCACTGTGCCGTTTGTAAAGAGCCATTCC
AGCTCAATTCGGAGGCTCGTGAGATGCCGTGTAAGCACATTTATCATGGT
GAATGTATTCTCCCTTGGCTTTCGATGCGCAACTCGTGCCCATTGTGCCG
GCGCGAGTTGCCGAATGAAGCAAATGACAGAGGCAGAAATGTCGGAGGTG
GCCCCGATGAGACGCTGGGGTTAACAAT
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