CV885188
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 3.551e-18 Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 598 PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAND 828 PPA+KA ++S+PVV I+ K C VC F+ REMPCKH++H CILPWL+ NSCPLCR ELP + D Sbjct: 53 PPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNAD 129
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.057e-18 Identity = 78/295 (26.44%), Postives = 120/295 (40.68%), Query Frame = 1 Query: 136 YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQR-----------PSNERYPAAEMY------------------LEDTQNPETFPXXXXXXXXXXXXXXS----PFNPVIVLRGPQ----TPDSGGGNEGTAMERGNFELFYDD----ATGAGLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPDETLGLT 876 Y+C+ C+ + I R D I CP C +GFIE++ R P+++ P E +D+ TFP P R P+ T + G +EG G + + AT L P L ++ D+ G+ G D ++ QL + +F N PPA K I+++P V + E HV C VCK+ + L R++PC H++H CI+PWL +SCP+CR+ L G+N P G++ Sbjct: 11 YFCHCCS--VEIVPRLPDYI-CPRCESGFIEELPEETRSTENGSAPSTAPTDQSRPPLEHVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPESRRERDHPSRHRYGARQPRARLTTRRATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYAWGANGLDAIITQL-------LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL------TGQNTATNPPGLTGVS 289
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.911e-18 Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 484 GLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPDETLGL 873 GL P L ++ D+ G+ G D ++ QL + +F N PPA K I+++P V + E HV C VCKE + L R++PC H++H CI+PWL +SCP+CR+ L G+N P G+ Sbjct: 167 GLGPWGVLHSNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL------TGQNTATNPPGLTGV 290
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 7.911e-18 Identity = 55/158 (34.81%), Postives = 78/158 (49.37%), Query Frame = 1 Query: 388 RGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMS--------DFLMG-SGFDRVLDQLT-QLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDR 831 RG PD EG F F+ ++ G P P S S D+ G +G D ++ QL QL+ G PPA K I S+P VT+ + V C VCKE + + E R++PC H +H CI+PWL + ++CP+CR+ L E + R Sbjct: 130 RGSSRPDRSPAIEGILQHI--FAGFFANSAIPG-SPHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGP-----PPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTR 279
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.033e-17 Identity = 70/276 (25.36%), Postives = 110/276 (39.86%), Query Frame = 1 Query: 136 YWCYRCNRII--RIQSRTEDAIVCPDCHTGFIEQIETIQ---------------RPSNERYPAAEMYLEDTQNPETFPXXXXXXXXXXXXXXSPFNPV--------------IVLRGPQ----TPDSGGGNEGTAMERGNFELFYDDA------TGAGLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819 Y+C+ C I R+ T CP C +GFIE++ + RPS E +A+ L TF P R P+ T + G NEG G + + + G+ P L ++ D+ G+ G D ++ QL + +F N PPA I+++P + I E HV C VCKE + + R++PC H++H +CI+PWL ++CP+CR+ L + Sbjct: 11 YFCHSCTAEIIPRLPEYT-----CPRCDSGFIEELPETRNSENNSSNNSGTDQNRPSFENLESAQFTLPSGYGQVTFGIFNEGLDFPIFGTSGPVEEPRDGESRREHQSRQRYGARQPRARLSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQ 274
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.349e-17 Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1 Query: 556 LTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAND 828 L +DF + + PPASK +ES+P VT+ C VC F+ R++PC+H++H CILPWL NSCPLCR ELP ++ D Sbjct: 39 LGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPD 129
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17 Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 388 RGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMS--------DFLMG-SGFDRVLDQLT-QLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDR 831 RG PD EG + F F+ ++ G P P S S D+ G +G D ++ QL QL+ G PPA K I S+P VT+ + V C VCKE + + + R++PC H +H CI+PWL + ++CP+CR+ L E + R Sbjct: 131 RGSTRPDRSPAIEGIIQQI--FAGFFANSAIPG-SPHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGP-----PPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTR 280
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17 Identity = 72/277 (25.99%), Postives = 112/277 (40.43%), Query Frame = 1 Query: 136 YWCYRCNRII--RIQSRTEDAIVCPDCHTGFIEQI-ETIQ---------------RPSNERYPAAEMYLEDTQNPETFPXXXXXXXXXXXXXXSPFNPV--------------IVLRGPQ----TPDSGGGNEGTAMERGNFELFYDDA------TGAGLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819 Y+C+ C I R+ T CP C +GFIE++ ET + RPS E +A+ L TF P R P+ T + G NEG G + + + G+ P L ++ D+ G+ G D ++ QL + +F N PPA I+++P + I E HV C VCKE + + R++PC H++H +CI+PWL ++CP+CR+ L + Sbjct: 11 YFCHSCTAEITPRLPEYT-----CPRCDSGFIEELPETSRNSENNSSNNSRTDQNRPSFENLESAQFTLPSGYGQVTFGIFNEGLDFPIFGTSGPVEETRDGESRREHQSRQRYGARQPRARLSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQ 275
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17 Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1 Query: 556 LTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 822 L LDF + + PPA+K +ES+P VT+ C VC F+ R++PC+H++H CILPWL NSCPLCR ELP ++ Sbjct: 39 LGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDS 127
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17 Identity = 72/277 (25.99%), Postives = 111/277 (40.07%), Query Frame = 1 Query: 136 YWCYRCNRII--RIQSRTEDAIVCPDCHTGFIEQI-ETIQ---------------RPSNERYPAAEMYLEDTQNPETFPXXXXXXXXXXXXXXSPFNPV--------------IVLRGPQ----TPDSGGGNEGTAMERGNFELFYDDA------TGAGLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819 Y+C+ C I R+ T CP C +GFIE++ ET + RPS E +A+ L TF P R P+ T G NEG G + + + G+ P L ++ D+ G+ G D ++ QL + +F N PPA I+++P + I E HV C VCKE + + R++PC H++H +CI+PWL ++CP+CR+ L + Sbjct: 11 YFCHSCTAEITPRLPEYT-----CPRCDSGFIEELPETSRNSESNSSNNSGTDQNRPSFENIESAQFTLPSGYGQVTFGIFNEGLDFPMFGTSGPVEETRDGESRREHQSRQRYGARQPRARMSTRRGAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQ 275 The following BLAST results are available for this feature:
BLAST of CV885188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885188 ID=CV885188; Name=CV885188; organism=Citrus sinensis; type=EST; length=878bpback to top |