CV885188

Overview
NameCV885188
Unique NameCV885188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11162 contig Csv1_Contig11162:407..1285. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: PJA2_HUMAN (E3 ubiquitin-protein ligase Praja2 OS=Homo sapiens GN=PJA2 PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 31/90 (34.44%), Postives = 45/90 (50.00%), Query Frame = 1
Query:  595 NPPASKAAIESMPVVTIAESHVA--KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPD 858
            NPPASK +I+ +P   + E H A  +E  C +C   +  +  A E+PC H +H  C+  WL    +CP+CRR  P    +        PD
Sbjct:  605 NPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIEASAAPSSEPD 694          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe GN=SPAP32A8.03c PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 38/135 (28.15%), Postives = 64/135 (47.41%), Query Frame = 1
Query:  439 ERGNFELFYDDATGAGLRPLPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRN 840
            ++G  E F      + +  L  +  D+  G+ G D ++ QL +            PA +  I  M V    +  + +E  C +C E F++N +  ++PCKH +H  CI PWL +  +C +CR   P + N + RN
Sbjct:  319 QQGEGEPFNPANMFSNIFNLSGNPGDYAWGARGLDDIISQLME---QAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR--APVDPNSQQRN 448          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: PJA1_MOUSE (E3 ubiquitin-protein ligase Praja1 OS=Mus musculus GN=Pja1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.171e-11
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:  595 NPPASKAAIESMPVVTIAESH--VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 813
            NPPASK +I+++P + + E H  V +E  C +C   +     A E+PC H +H  C+  WL    +CP+CR   P
Sbjct:  501 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: PJA1_HUMAN (E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens GN=PJA1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.171e-11
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:  595 NPPASKAAIESMPVVTIAESH--VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 813
            NPPASK +I+++P + + E H  V +E  C +C   +     A E+PC H +H  C+  WL    +CP+CR   P
Sbjct:  566 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640          
The following BLAST results are available for this feature:
BLAST of CV885188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PJA2_HUMAN1.106e-1134.44E3 ubiquitin-protein ligase Praja2 OS=Homo sapiens... [more]
YKW3_SCHPO4.204e-1128.15Uncharacterized RING finger protein P32A8.03c OS=S... [more]
PJA1_MOUSE7.171e-1137.33E3 ubiquitin-protein ligase Praja1 OS=Mus musculus... [more]
PJA1_HUMAN7.171e-1137.33E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885188 ID=CV885188; Name=CV885188; organism=Citrus sinensis; type=EST; length=878bp
TTAGGGTTTTTGAATTGCTGATTCTTTTGTTCAGTCTATAAAAATTGAAC
ATTAGATCTGAAGGGTTTATCATTTCTGAGTGAAAAATAGAAACTTTCTT
CTGTTCTTTAATCTATGTCTTCAATCGGATTGTCGTACTGGTGCTACCGC
TGCAACCGGATCATCCGGATTCAGTCCAGGACTGAAGACGCAATCGTTTG
CCCCGATTGCCATACCGGCTTCATCGAACAGATTGAAACCATTCAGCGAC
CTTCGAACGAGAGATATCCCGCCGCCGAAATGTACTTAGAAGACACCCAA
AACCCGGAGACATTCCCGACCACGAGGTTTGGTCGGACTCGGAGAAACGG
CGGAGACCGATCCCCTTTCAACCCTGTCATCGTCCTCCGTGGGCCCCAGA
CCCCTGATTCAGGCGGTGGAAATGAAGGAACTGCCATGGAGAGAGGAAAC
TTCGAGCTTTTTTATGACGACGCTACCGGGGCGGGTCTTAGGCCATTACC
CGCGAGCATGTCGGACTTTTTGATGGGTTCGGGTTTTGACCGGGTCCTCG
ACCAGTTAACACAGTTAGATTTTAACGGGGTGACGAGGTTCGTGAACCCT
CCGGCTTCAAAGGCTGCGATCGAGTCAATGCCGGTGGTCACAATTGCAGA
AAGCCACGTGGCGAAGGAATCGCACTGTGCCGTTTGTAAAGAGCCATTCC
AGCTCAATTCGGAGGCTCGTGAGATGCCGTGTAAGCACATTTATCATGGT
GAATGTATTCTCCCTTGGCTTTCGATGCGCAACTCGTGCCCATTGTGCCG
GCGCGAGTTGCCGAATGAAGCAAATGACAGAGGCAGAAATGTCGGAGGTG
GCCCCGATGAGACGCTGGGGTTAACAAT
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