CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: 4CL2_DICDI (Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.180e-29
Identity = 78/208 (37.50%), Postives = 113/208 (54.33%), Query Frame = -2
Query:  269 YGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYK-LPTRLFLWDSLPRNAMGKVNKKELKN 883
            YG TE   A      G  K+G+ G  LP   VKI   E+G +      GEIC+K P++   Y+   K T +    DGFFKTGD G  DEDGYY I+ R S +++K  G+++   E+E++LL HP VA+ CV+GL   D G+     +V+         K    L+ +EL  WA  K+A YK     +F   ++P++A GK+ +K LK+
Sbjct:  348 YGATELSPACFVIPSGLIKSGSAGILLPNQLVKIISPETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDGYYFIVDR-SKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVI---------KQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKD 545          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_BACSU (2-succinylbenzoate--CoA ligase OS=Bacillus subtilis GN=menE PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.082e-28
Identity = 82/214 (38.32%), Postives = 113/214 (52.80%), Query Frame = -2
Query:  269 GHRFLERYGMTEFVMAIS--NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 904
            G    + YGMTE    I   +P     K G+ G PL   ++KI  D    +    GEI VK P++ K Y+      + SF  +G+ KTGD G  D +G+  +L R S D++  GG  +   E+ESVLL HPAVAE  V G  DK +G    A +VL           KPV S  EL  + K++LA YK+P + F+ D LPRNA  K+ + +LK+
Sbjct:  279 GFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQ-NGWLKTGDLGYLDNEGFLYVLDRRS-DLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDKKWGKVPHAYLVLH----------KPV-SAGELTDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKD 479          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: FAT2_YEAST (Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.413e-28
Identity = 75/215 (34.88%), Postives = 118/215 (54.88%), Query Frame = -2
Query:  260 LERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTA-DGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 892
            LE Y MTE    M  +N   G RK GTVG P  GV V I +D       G VGE+ ++  ++   Y   PK  K++FT  + +F+TGD G  D +G+ ++ GR   +++  GG K+S +E++ ++L HP + E    G+PD  YG  V A IVL++  K         ++ +EL  + K  LA +K+PT+++  D LP+ A GK+ ++ +    A
Sbjct:  331 LEAYAMTEASHQMTSNNLPPGKRKPGTVGQP-QGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIK-ELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVLKKGEK---------MTYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVIAETFA 534          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: 4CL3_DICDI (Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum GN=4cl3 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.410e-28
Identity = 74/208 (35.58%), Postives = 111/208 (53.37%), Query Frame = -2
Query:  269 YGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYK-LPTRLFLWDSLPRNAMGKVNKKELKN 883
            YG TE          G  K+G+ G  LP +  KI   E+G +      GEIC+K P++   Y+   K T +    DGF KTGD G  DEDGY+ I+ R S +++K  G+++   E+E++LL HP VA+ CV+GL   D G+     +V+         K    L+ +EL  WA  K+A YK     +F   ++P++A GK+ +K LK+
Sbjct:  348 YGATELSPCCFVTPNGLVKSGSSGTLLPNLLAKIISSETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYFFIIDR-SKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVI---------KQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKD 545          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: 4CL1_DICDI (Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.148e-28
Identity = 76/208 (36.54%), Postives = 111/208 (53.37%), Query Frame = -2
Query:  269 YGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYK-LPTRLFLWDSLPRNAMGKVNKKELKN 883
            YG TE   A      G  K+G+ G  LP    KI   E+G +      GEIC+K P++   Y+   K T +    DGF KTGD G  DEDGYY I+ R S +++K  G+++   E+E++LL HP VA+ CV+GL   D G+     +V+         K    L+ +EL  WA  K+A YK     +F   ++P++A GK+ +K LK+
Sbjct:  348 YGATELSPACFVIPSGLVKSGSAGILLPNQLAKIISPETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYYFIVDR-SKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVI---------KQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKD 545          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LCFA_YERPE (Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.160e-28
Identity = 73/222 (32.88%), Postives = 120/222 (54.05%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            ++WET+TG   LE YG+TE    ++ NP      +G++G P+P   V++ +D+      G  GE+ V+ P +   YW+ P  T D    DG+  TGD    DEDG+  I+ R   D++ V G+ +   EIE V+  H  V E  V+G+P++  G+AV   +V          K+   L+ +EL T  +  L  YK+P  +   D LP++ +GK+ ++EL+++
Sbjct:  343 EKWETLTGKHLLEGYGLTECSPLVTGNPYDLKHYSGSIGLPVPSTDVRLRDDDGNDVELGKPGELWVRGPQVMLGYWQRPDAT-DDVLKDGWLATGDIATMDEDGFLRIVDRKK-DMILVSGFNVYPNEIEEVVALHAKVLESAVIGVPNEVSGEAVKVFVV----------KNDASLTPEELLTHCRRYLTGYKVPKIVEFRDELPKSNVGKILRRELRDE 552          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM3_MOUSE (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Mus musculus GN=Acsm3 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 9.160e-28
Identity = 81/228 (35.53%), Postives = 115/228 (50.44%), Query Frame = -2
Query:  266 MQQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICV-----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAK-RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 928
            M+QW   TG    E YG TE V+   N      K G++G P P   VKI ++   +   G  G+I +     +   LF  Y   P  T  +     F+ TGD G  DEDGY+  + R S DI+   GY++   E+ES L+EHP++AE  V+  PD   G+ V A IVL  + K  DQE+ K     +E+    K   APYK P ++   + LP+   GKV + EL+ +
Sbjct:  355 MEQWRKKTGLDIYEGYGQTETVLICGNFKGMKIKPGSMGKPSPAFDVKILDENGATLPPGQEGDIALQVLPERPFGLFTHYVDNPSKTASTLRGS-FYITGDRGYMDEDGYFWFVAR-SDDIILSSGYRIGPFEVESALIEHPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKSHDQEQLK-----KEIQEHVKKTTAPYKYPRKVEFIEELPKTVSGKVKRNELRKK 575          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM3_RAT (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Rattus norvegicus GN=Acsm3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.562e-27
Identity = 82/229 (35.81%), Postives = 118/229 (51.53%), Query Frame = -2
Query:  266 MQQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICV-----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAK-RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 928
            M+QW+  TG    E YG TE V+   N      K G++G P P   V+I  DE+G+       G+I V     +   LF  Y   P  T  +   + F+ TGD G  DEDGY+  + R S D++   GY++   E+ES L+EHP++AE  V+  PD   G+ V A IVL  + K  DQE+ K     +E+    K   APYK P ++   + LP+   GKV + EL+ +
Sbjct:  355 MEQWKKKTGLDIYEGYGQTETVLICGNFKGMKIKPGSMGKPSPAFNVEIL-DENGTILPPGQEGDIAVQVLPDRPFGLFTHYVDNPSKTASTLRGN-FYITGDRGYMDEDGYFWFVAR-SDDVILSSGYRIGPFEVESALIEHPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKLHDQEQLK-----KEIQEHVKKTTAPYKYPRKIEFIEELPKTVSGKVKRNELRRK 575          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_BACLD (2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.481e-27
Identity = 79/208 (37.98%), Postives = 110/208 (52.88%), Query Frame = -2
Query:  275 LERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 892
            ++ YGMTE    I+   P     K G+ G PL    +KI ++ +       GEI VK P++ K Y K     KDSF  DG+FKTGD G  D+DG+  +L R S D++  GG  +   E+E+VLL HP VAE  V G+ DK +G    A +V +     D+E         EL  + K++LA YK+P      D LPRNA  K+ + +L
Sbjct:  284 VQSYGMTETCSQIATLAPEYSIEKLGSAGKPLFASSIKIEKNGTECQPGEHGEITVKGPTVMKGYLKNEAANKDSFN-DGWFKTGDIGYFDDDGFLYVLDRRS-DLIISGGENIYPAEVEAVLLSHPNVAEAGVKGVDDKTWGKVPHAYLVADSPV--DEE---------ELSEFCKERLASYKVPKAFHFVDRLPRNASNKLMRHKL 478          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: FAT2_SCHPO (Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe GN=SPCC1827.03c PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.546e-27
Identity = 74/207 (35.75%), Postives = 114/207 (55.07%), Query Frame = -2
Query:  281 LERYGMTEFVMAIS-NPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKK 892
            LE Y MTE    ++ NPL     K  +VG P  GV++KI + +      G  GEICV+  ++ K Y   P   K SFT D FF+TGD GK D+DGY  I GR   +++  GG K+S  EI++VL++HP V+E     +PD+ YG  + A I            +   ++ ++L  + + K+A +K+P + +  D +P+ A GKV ++
Sbjct:  303 LEAYAMTEASHQMTTNPLPPLVHKPHSVGKPF-GVELKILDQKGNEMPQGKEGEICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIK-ELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAI---------NPVAGKTVTPKQLHDYLEQKVAAFKIPKKFYFTDRIPKTATGKVQRR 498          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
4CL2_DICDI2.180e-2937.50Probable 4-coumarate--CoA ligase 2 OS=Dictyosteliu... [more]
MENE_BACSU1.082e-2838.322-succinylbenzoate--CoA ligase OS=Bacillus subtili... [more]
FAT2_YEAST1.413e-2834.88Peroxisomal-coenzyme A synthetase OS=Saccharomyces... [more]
4CL3_DICDI2.410e-2835.58Probable 4-coumarate--CoA ligase 3 OS=Dictyosteliu... [more]
4CL1_DICDI3.148e-2836.54Probable 4-coumarate--CoA ligase 1 OS=Dictyosteliu... [more]
LCFA_YERPE9.160e-2832.88Long-chain-fatty-acid--CoA ligase OS=Yersinia pest... [more]
ACSM3_MOUSE9.160e-2835.53Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
ACSM3_RAT1.562e-2735.81Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
MENE_BACLD3.481e-2737.982-succinylbenzoate--CoA ligase OS=Bacillus licheni... [more]
FAT2_SCHPO4.546e-2735.75Putative peroxisomal-coenzyme A synthetase OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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