CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: YTCI_BACSU (Uncharacterized acyl--CoA ligase ytcI OS=Bacillus subtilis GN=ytcI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.013e-26
Identity = 76/216 (35.19%), Postives = 111/216 (51.39%), Query Frame = -2
Query:  266 GHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICV--KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 904
            G +  + YG TE  + +        K G++G P PG QV+I  ++      G VG+I V   +P+LFKEY+K P+  K     D +F TGD  ++DE+GY+    R   DI+   GY +   E+E  L++HP V EC V+  PD+  G  V A +VL+   KR  E  K       L    K   APYK P  +   +SLP+ A  K+ + EL+ +
Sbjct:  312 GIKVRDGYGQTESTLLVGVLKDTPIKPGSMGKPTPGNQVEIINEDGEICKPGEVGDIAVHLSTPALFKEYFKDPERMKTQIRGD-YFLTGDRARKDEEGYFWFESRND-DIIISSGYTIGPFEVEDALVKHPEVKECAVVASPDEIRGSIVKAYVVLQNHEKRSDELVK------MLQNHVKTITAPYKYPREIEFVESLPKTASAKIRRVELRKR 519          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_GEOKA (2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus GN=menE PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.323e-26
Identity = 75/208 (36.06%), Postives = 113/208 (54.33%), Query Frame = -2
Query:  272 ERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 889
            + YGMTE    I+   P     K G+ G PL   ++ I +D   +     GEI VK P++ K YW+ P+ T  +    G+F TGD G  DEDG+  +L R S D++  GG  +   E+E+VLL HP V E  V G+ ++ +G    A + L+  A  D+       +L+  C   +++LA YK+P R++  D LPRNA  K+ ++ELK
Sbjct:  284 QTYGMTETASQIATLAPEYSLTKLGSAGKPLFPAELCILKDGKPAAPHEAGEIVVKGPNVTKGYWQRPEATAQAIRG-GWFFTGDIGYLDEDGFLYVLDRRS-DLIISGGENVYPAEVEAVLLSHPDVEEAGVTGVENETWGQVPYAFVRLKRGASPDE------AALRAFC---RERLAKYKVPARIYFVDELPRNAAQKLLRRELK 480          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.727e-26
Identity = 75/217 (34.56%), Postives = 119/217 (54.84%), Query Frame = -2
Query:  263 GHRFLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQL 904
            G   LE YG++E   +   NP    RK G++G  +  V+ K+  D  G +  A  VGE+ VK P++ K Y+K+P  T+ +   DG+  TGD  ++DEDGY+ I+ R   D++ VGGY +   E+E VL  HP V E  V+G+PD   G+AV   +V +     +++       + + C   +  LA YK P  +   D +P+NA GK+ ++ L++ L
Sbjct:  308 GVTILEGYGLSEASPVTCFNPFDRGRKPGSIGTSILHVENKVV-DPLGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALK-DGWLYTGDLARRDEDGYFYIVDRKK-DMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPKRSGVTEED-------IMQHC---EKHLAKYKRPAAITFLDDIPKNATGKMLRRALRDIL 511          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALTY (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella typhimurium GN=caiC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.727e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAKALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALPC (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi C (strain RKS4594) GN=caiC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.727e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAGALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALHS (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella heidelberg (strain SL476) GN=caiC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.727e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAKALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALCH (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella choleraesuis GN=caiC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.727e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAGALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_CITK8 (Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.727e-26
Identity = 70/216 (32.41%), Postives = 122/216 (56.48%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G P    +  I ++++ S  AG +GEIC+K     ++FKEY+  P+ T  +  A+G+  TGD+G +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            L+ +E   + +  +A +K+P+ L + + LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEADIRDEQNRSLPAGEIGEICIKGVPGKTIFKEYYARPEATAKALEANGWLHTGDSGYRDEEGFFYFVDR-RCNMIKRGGENVSCIELENIISAHPKIQDIVVIGIHDSIRDEAIKAFVVLNE---------GETLTEEEFFAFCEQNMAKFKVPSFLEIRNDLPRNCSGKIIKKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALTI (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella typhi GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALSV (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
YTCI_BACSU1.013e-2635.19Uncharacterized acyl--CoA ligase ytcI OS=Bacillus ... [more]
MENE_GEOKA1.323e-2636.062-succinylbenzoate--CoA ligase OS=Geobacillus kaus... [more]
LCFB_BACSU1.727e-2634.56Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
CAIC_SALTY1.727e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALPC1.727e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALHS1.727e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALCH1.727e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_CITK81.727e-2632.41Probable crotonobetaine/carnitine-CoA ligase OS=Ci... [more]
CAIC_SALTI2.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALSV2.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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