CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALPK (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi A (strain AKU_12601) GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALPB (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALPA (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi A GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALNS (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella newport (strain SL254) GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALEP (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALDC (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella dublin (strain CT_02021853) GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALA4 (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella agona (strain SL483) GN=caiC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D++    AG +GEIC+K     ++FKEY+  P+ T  +   +G+  TGD+G QDEDGY+  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A IVL E            LS  E  ++ ++ +A +K+P+ + +   LPRN  GK+ KK LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDR-RCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNE---------GETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO81 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O81 (strain ED1a) GN=caiC PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.848e-26
Identity = 72/216 (33.33%), Postives = 118/216 (54.63%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEICDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSM (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.026e-26
Identity = 72/216 (33.33%), Postives = 118/216 (54.63%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.564e-26
Identity = 72/216 (33.33%), Postives = 119/216 (55.09%), Query Frame = -2 
Query:  272 GHRFLERYGMTEFVMAI-SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I  + L   R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRLGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVLGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKVLPRNCSGKIIRKNLK 517
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
CAIC_SALPK2.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALPB2.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALPA2.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALNS2.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALEP2.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALDC2.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALA42.256e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_ECO813.848e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOSM5.026e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SHIDS6.564e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
back to top