CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_BRUA2 (Acetyl-coenzyme A synthetase OS=Brucella abortus (strain 2308) GN=acsA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.764e-14
Identity = 56/214 (26.17%), Postives = 100/214 (46.73%), Query Frame = -2
Query:  272 LERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICVKS--PSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 892
            ++ +  TE    +  PL GA   K G+   P  GV+  + ++E    +    G +C+    P   +  +   K   +++  T  G + +GD  ++DEDGYY I GR   D++ + G++L   EIES L+ H +V+E  V+G P    G  +   + L   A    +   P    +EL    + ++ P   P ++     LP+   GK+ ++ L+
Sbjct:  410 VDTWWQTENGGILITPLPGATDLKPGSATRPFFGVKPVLVDNEGNVQEGVADGNLCISDSWPGQMRTVYGDHKRFIETYFSTYKGMYFSGDGCRRDEDGYYWITGRVD-DVLNISGHRLGTAEIESALVSHHSVSEAAVVGYPHPIKGQGIYCYVTLMTGA----DAQDPDELRKELVQHVRKEIGPIATPDKIQFAPGLPKTRSGKIMRRILR 618          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_BRUA1 (Acetyl-coenzyme A synthetase OS=Brucella abortus (strain S19) GN=acsA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.764e-14
Identity = 56/214 (26.17%), Postives = 100/214 (46.73%), Query Frame = -2
Query:  272 LERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICVKS--PSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 892
            ++ +  TE    +  PL GA   K G+   P  GV+  + ++E    +    G +C+    P   +  +   K   +++  T  G + +GD  ++DEDGYY I GR   D++ + G++L   EIES L+ H +V+E  V+G P    G  +   + L   A    +   P    +EL    + ++ P   P ++     LP+   GK+ ++ L+
Sbjct:  410 VDTWWQTENGGILITPLPGATDLKPGSATRPFFGVKPVLVDNEGNVQEGVADGNLCISDSWPGQMRTVYGDHKRFIETYFSTYKGMYFSGDGCRRDEDGYYWITGRVD-DVLNISGHRLGTAEIESALVSHHSVSEAAVVGYPHPIKGQGIYCYVTLMTGA----DAQDPDELRKELVQHVRKEIGPIATPDKIQFAPGLPKTRSGKIMRRILR 618          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_ECOLI (2-succinylbenzoate--CoA ligase OS=Escherichia coli (strain K12) GN=menE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 59/214 (27.57%), Postives = 105/214 (49.07%), Query Frame = -2
Query:  251 YGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLP---RNAMGKVNKKELKNQLAAQQ 883
            YG+TEF   +    + A     VG+PLPG +VKI  +E          + +++ S+ + YW+  ++       +G++ T D G+   +G   I+GR   ++   GG  +   E+E V+  HPAV +  ++ + DK++G    A++  + E+              +L  W KDKLA ++ P R   W +LP   +N   K++++ LK  +  QQ
Sbjct:  269 YGLTEFASTVC--AKEADGLADVGSPLPGREVKIVNNE----------VWLRAASMAEGYWRNGQLVS-LVNDEGWYATRDRGEM-HNGKLTIVGRLD-NLFFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGHRPVAVMEYDHES-------------VDLSEWVKDKLARFQQPVR---WLTLPPELKNGGIKISRQALKEWVQRQQ 451          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_SINMW (Acetyl-coenzyme A synthetase OS=Sinorhizobium medicae (strain WSM419) GN=acsA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 59/215 (27.44%), Postives = 99/215 (46.05%), Query Frame = -2
Query:  272 LERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESGS-DAAGVGEICVKSP---SLFKEYWKLPKVTKDSF-TADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAII-VLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 892
            ++ +  TE    +  PL GA   K G+   P  GVQ +I + E    + A  G +C+       +   Y    +  +  F T  G + TGD  ++DEDGYY I GR   D++ V G++L   E+ES L+ H  V+E  V+G P    G  +   + ++  E   D+ +       Q L    + ++ P   P ++     LP+   GK+ ++ L+
Sbjct:  410 VDTWWQTETGGILITPLPGATDLKPGSATRPFFGVQPQIVDGEGNVVEGAADGNLCIIDSWPGQMRTVYGDHERFIQTYFSTYKGKYFTGDGCRRDEDGYYWITGRVD-DVLNVSGHRLGTAEVESALVSHQLVSEAAVVGYPHSIKGQGIYCYVSLMAGEVGNDELR-------QALVKHVRSEIGPIATPDKIQFAPGLPKTRSGKIMRRILR 616          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSS3_PONAB (Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Pongo abelii GN=ACSS3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.832e-14
Identity = 54/189 (28.57%), Postives = 84/189 (44.44%), Query Frame = -2
Query:  275 GTVGNPLPGVQVKIAEDESGS-DAAGVGEICVK---SPSLFKEYWKLPKVTKDSFTAD--GFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 823
            G  G  +PG  V I +D      A  +G I VK    P  F   WK  +  K  +     G++ T D G  DE+GY  ++ R   D++ V G+++SA  IE  +L H  VA+C V+G  D   G    A+ VL ++    +E+      L+E+    +  + P            LP+   GK+ +  L
Sbjct:  473 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVD-DVINVAGHRISAGAIEESILSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINATEEQ-----VLEEIVKHVRQNIGPVAAFRNAVFVKQLPKTRSGKIPRSAL 655          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSS3_HUMAN (Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Homo sapiens GN=ACSS3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.832e-14
Identity = 54/189 (28.57%), Postives = 84/189 (44.44%), Query Frame = -2
Query:  275 GTVGNPLPGVQVKIAEDESGS-DAAGVGEICVK---SPSLFKEYWKLPKVTKDSFTAD--GFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 823
            G  G  +PG  V I +D      A  +G I VK    P  F   WK  +  K  +     G++ T D G  DE+GY  ++ R   D++ V G+++SA  IE  +L H  VA+C V+G  D   G    A+ VL ++    +E+      L+E+    +  + P            LP+   GK+ +  L
Sbjct:  473 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYLYVMSRVD-DVINVAGHRISAGAIEESILSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINATEEQ-----VLEEIVKHVRQNIGPVAAFRNAVFVKQLPKTRSGKIPRSAL 655          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: GRSB_BREBE (Gramicidin S synthase 2 OS=Brevibacillus brevis GN=grsB PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.284e-13
Identity = 60/189 (31.75%), Postives = 86/189 (45.50%), Query Frame = -2
Query:  275 TVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 820
            T+G PL  V V I          GV GE+C+    L + Y   P++T D F  + F      +KTGD  K   DG    +GR    + KV GY++   EIES +LE+  + E  V+          + A IV EE+          VL+L +L ++    L  Y +P      DS+P    GKV++K L
Sbjct: 3898 TIGCPLSNVDVYIVNCNHQLQPVGVVGELCIGGQGLARGYLNKPELTADKFVVNPFVPGERMYKTGDLAKWRSDGMIEYVGRVDEQV-KVRGYRIELGEIESAILEYEKIKEAVVIVSEHTASEQMLCAYIVGEED----------VLTL-DLRSYLAKLLPSYMIPNYFIQLDSIPLTPNGKVDRKAL 4074          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_PSEU5 (Acetyl-coenzyme A synthetase OS=Pseudomonas stutzeri (strain A1501) GN=acsA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.284e-13
Identity = 64/226 (28.32%), Postives = 102/226 (45.13%), Query Frame = -2
Query:  272 WETITGHR--FLERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESGSDAAGVGE----ICVKSPSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 919
            +ET+   R   ++ +  TE    + +PL GA   K G+   PL GV   +  D  G+   G  E    I    P   +  +       D++  T  G + TGD  ++DEDGYY I GR   D++ V G+++   EIES L+ H  VAE   +G+P    G A+   + L    +            QEL  W + ++ P  +P  +     LP+   GK+ ++ L+
Sbjct:  399 YETVGRSRCPIVDTWWQTETGGILISPLPGATALKPGSATRPLFGVVPGLV-DNLGNLLEGPAEGNLVILDSWPGQMRTIYGDHDRFVDTYFKTFRGMYFTGDGARRDEDGYYWITGRVD-DVLNVSGHRMGTAEIESALVAHAKVAEAAAVGVPHPLKGQAIYVYVTLVAGTEPSDTLR------QELQQWVRHEIGPIAVPDTIQWAPGLPKTRSGKIMRRLLR 616          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_XANP2 (Acetyl-coenzyme A synthetase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=acsA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.677e-13
Identity = 56/214 (26.17%), Postives = 100/214 (46.73%), Query Frame = -2
Query:  272 LERYGMTEFVMAISNPLRGARKA--GTVGNPLPGVQVKIAEDESGS-DAAGVGEICVKS--PSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 892
            ++ +  TE    +  PL GA K   G+   P  GV  ++ + E    + A  G + +    P   +  +   +  + ++  T  G + TGD  ++D DG+Y I GR   D++ V G+++   E+ES L+ HP V+E  V+G P    G  + A + L +  +  +E  K      EL  W + ++ P   P  +     LP+   GK+ ++ L+
Sbjct:  408 VDTWWQTETGGILITPLPGATKLKPGSATRPFFGVMPEVVDAEGKVLEGACEGNLVIADSWPGQMRTVYGDHERFEQTYFSTYPGKYFTGDGCRRDADGFYWITGRVD-DVINVSGHRMGTAEVESALVAHPKVSEAAVVGFPHDIKGQGIYAYVTLMDGEEPTEELRK------ELVGWVRREIGPIASPDLIQFAPGLPKTRSGKIMRRILR 614          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_RHOP5 (Acetyl-coenzyme A synthetase OS=Rhodopseudomonas palustris (strain BisA53) GN=acsA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.677e-13
Identity = 58/214 (27.10%), Postives = 97/214 (45.33%), Query Frame = -2
Query:  272 LERYGMTEFVMAISNPLRGARKA--GTVGNPLPGVQVKIAE-DESGSDAAGVGEICVKSP---SLFKEYWKLPKVTKDSFTA-DGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 892
            ++ +  TE    +  PL GA K   G+   P  GV  +I + D +  +    G +C+       +   Y    +  +  F+A  G + TGD  ++D DGYY I GR   D++ V G+++   E+ES L+ HP V+E  V+G P    G  + A + L    +  +   K      EL  W +  + P   P  +     LP+   GK+ ++ L+
Sbjct:  407 VDTWWQTETGGILITPLPGATKLKPGSATRPFFGVVPQIMDADANVLEGECTGNLCLAKSWPGQMRTVYGDHARFEQTYFSAYPGKYFTGDGCRRDADGYYWITGRVD-DVINVSGHRMGTAEVESSLVAHPQVSEAAVVGYPHDIKGQGIYAYVTLMTGVEPTEALRK------ELVAWVRKDIGPIASPDLIQFAPGLPKTRSGKIMRRILR 613          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
ACSA_BRUA25.764e-1426.17Acetyl-coenzyme A synthetase OS=Brucella abortus (... [more]
ACSA_BRUA15.764e-1426.17Acetyl-coenzyme A synthetase OS=Brucella abortus (... [more]
MENE_ECOLI7.528e-1427.572-succinylbenzoate--CoA ligase OS=Escherichia coli... [more]
ACSA_SINMW7.528e-1427.44Acetyl-coenzyme A synthetase OS=Sinorhizobium medi... [more]
ACSS3_PONAB9.832e-1428.57Acyl-CoA synthetase short-chain family member 3, m... [more]
ACSS3_HUMAN9.832e-1428.57Acyl-CoA synthetase short-chain family member 3, m... [more]
GRSB_BREBE1.284e-1331.75Gramicidin S synthase 2 OS=Brevibacillus brevis GN... [more]
ACSA_PSEU51.284e-1328.32Acetyl-coenzyme A synthetase OS=Pseudomonas stutze... [more]
ACSA_XANP21.677e-1326.17Acetyl-coenzyme A synthetase OS=Xanthobacter autot... [more]
ACSA_RHOP51.677e-1327.10Acetyl-coenzyme A synthetase OS=Rhodopseudomonas p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
back to top