CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 56/178 (31.46%), Postives = 86/178 (48.31%), Query Frame = -2
Query:  380 GHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVL-SLQELC 904
            G +F E YG TE     S  + G   AG VG P+P   +K+ + E  +   A G GE+CVK P++FK Y K P  T ++   DG+  TGD GK   +G   I+ R         G  ++  +IE++ +    VA+  V G   +     + AI+V + E+     + +    S +ELC
Sbjct:  451 GCQFYEGYGQTECTAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMNYMAAMGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHG---ESLQAFLIAIVVPDAESLASWARKRGFEGSFEELC 625          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: 4CLL2_ORYSJ (4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = -2
Query:  446 FLERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA----DGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIV 895
            F++ YGMTE     +      +  K  +VG   P +  KI   ESGS       GE+ +  P++ KE+  +     D   A    DG+ +TGD    D DGY  I+GR   D +K  G++++  ++E+VL+ HP + +  V    D++ G+   A +V
Sbjct:  346 FIQGYGMTESTAVGTRGFNTCKHKKYASVGLLAPNMHAKIVHLESGSCLPPGSYGELWLHGPAIMKEFCFVTGYLNDDDDAFTRKDGWLRTGDIAYFDSDGYLFIVGRLK-DTIKYKGFQIAPADLEAVLIRHPEIIDVAVTSDEDEEAGEIPVAFVV 502          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: PKSJ_BACSU (Polyketide synthase pksJ OS=Bacillus subtilis GN=pksJ PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.087e-12
Identity = 51/191 (26.70%), Postives = 87/191 (45.55%), Query Frame = -2
Query:  269 TVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 820
            T+G P+   Q+ I + +     AGV GE+C+    + K Y+K  ++T   F  + F      ++TGD  +    G    +GR    + K+ G+++   +IES L EHP + EC V+   D                A    + +   L+ +EL  + K+ L  Y +P+     D +P    GK+++  LKN
Sbjct: 1465 TIGRPIANTQIYITDSQLAPVPAGVPGELCIAGDGVAKGYYKKEELTDSRFIDNPFEPGSKLYRTGDMARWLTGGRIEYIGRIDNQV-KIRGFRIELGDIESRLSEHPGILECVVVADMD-------------NLAAYYTAKHANASLTARELRHFVKNALPAYMVPSYFIQLDHMPLTPNGKIDRNSLKN 1641          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_RHILO (Acetyl-coenzyme A synthetase OS=Rhizobium loti GN=acsA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.087e-12
Identity = 58/216 (26.85%), Postives = 98/216 (45.37%), Query Frame = -2
Query:  272 LERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESGS-DAAGVGEICVKSP---SLFKEYWKLPKVTKDSF-TADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVL--EEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 892
            ++ +  TE    +  PL GA   KAG+   P  GV+ ++ + E    + A  G +C+       +   Y    +  +  F T  G + TGD  ++D DGYY I GR   D++ V G+++   E+ES L+ H  V+E  V+G P    G  + + + L   EE   D  K        EL    + ++     P ++     LP+   GK+ ++ L+
Sbjct:  411 VDTWWQTETGGILITPLPGATDLKAGSATRPFFGVKPQLVDGEGKVLEGAADGNLCITDSWPGQMRTVYGDHDRFVQTYFSTYKGKYFTGDGCRRDADGYYWITGRVD-DVINVSGHRMGTAEVESALVSHDKVSEAAVVGYPHDIKGQGIYSYVTLMKGEEPTEDLRK--------ELIAHVRKEIGAIASPDKIQFAPGLPKTRSGKIMRRILR 617          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_STAAW (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MW2) GN=menE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 57/207 (27.54%), Postives = 92/207 (44.44%), Query Frame = -2
Query:  275 YGMTE----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            +GMTE    F+ A    L    +  TVG P   V VKI       +  G GE+ +K  ++   Y     +T      +G+F TGD  + D +GY +I  R   D++  GG  +   +IE+V  + P +++   +G PD  +G       V E +           +S  +L  +    LA YK+P      D+LP  + GK+ + +L
Sbjct:  303 FGMTETCSQFLTATPEMLHA--RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNGYLYPTDLT--GTFENGYFNTGDIAEIDHEGYVMIYDRRK-DLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD-----------ISKAQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_STAAU (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus GN=menE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 57/207 (27.54%), Postives = 92/207 (44.44%), Query Frame = -2
Query:  275 YGMTE----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            +GMTE    F+ A    L    +  TVG P   V VKI       +  G GE+ +K  ++   Y     +T      +G+F TGD  + D +GY +I  R   D++  GG  +   +IE+V  + P +++   +G PD  +G       V E +           +S  +L  +    LA YK+P      D+LP  + GK+ + +L
Sbjct:  303 FGMTETCSQFLTATPEMLHA--RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNVYLYPTDLT--GTFENGYFNTGDIAEIDHEGYVMIYDRRK-DLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD-----------ISKAQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_STAAT (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=menE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 57/207 (27.54%), Postives = 92/207 (44.44%), Query Frame = -2
Query:  275 YGMTE----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            +GMTE    F+ A    L    +  TVG P   V VKI       +  G GE+ +K  ++   Y     +T      +G+F TGD  + D +GY +I  R   D++  GG  +   +IE+V  + P +++   +G PD  +G       V E +           +S  +L  +    LA YK+P      D+LP  + GK+ + +L
Sbjct:  303 FGMTETCSQFLTATPEMLHA--RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNVYLYPTDLT--GTFENGYFNTGDIAEIDHEGYVMIYDRRK-DLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD-----------ISKAQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_STAAS (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MSSA476) GN=menE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 57/207 (27.54%), Postives = 92/207 (44.44%), Query Frame = -2
Query:  275 YGMTE----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            +GMTE    F+ A    L    +  TVG P   V VKI       +  G GE+ +K  ++   Y     +T      +G+F TGD  + D +GY +I  R   D++  GG  +   +IE+V  + P +++   +G PD  +G       V E +           +S  +L  +    LA YK+P      D+LP  + GK+ + +L
Sbjct:  303 FGMTETCSQFLTATPEMLHA--RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNGYLYPTDLT--GTFENGYFNTGDIAEIDHEGYVMIYDRRK-DLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD-----------ISKAQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_STAAE (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain Newman) GN=menE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 57/207 (27.54%), Postives = 92/207 (44.44%), Query Frame = -2
Query:  275 YGMTE----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            +GMTE    F+ A    L    +  TVG P   V VKI       +  G GE+ +K  ++   Y     +T      +G+F TGD  + D +GY +I  R   D++  GG  +   +IE+V  + P +++   +G PD  +G       V E +           +S  +L  +    LA YK+P      D+LP  + GK+ + +L
Sbjct:  303 FGMTETCSQFLTATPEMLHA--RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNVYLYPTDLT--GTFENGYFNTGDIAEIDHEGYVMIYDRRK-DLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD-----------ISKAQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_STAAC (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain COL) GN=menE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 57/207 (27.54%), Postives = 92/207 (44.44%), Query Frame = -2
Query:  275 YGMTE----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            +GMTE    F+ A    L    +  TVG P   V VKI       +  G GE+ +K  ++   Y     +T      +G+F TGD  + D +GY +I  R   D++  GG  +   +IE+V  + P +++   +G PD  +G       V E +           +S  +L  +    LA YK+P      D+LP  + GK+ + +L
Sbjct:  303 FGMTETCSQFLTATPEMLHA--RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNVYLYPTDLT--GTFENGYFNTGDIAEIDHEGYVMIYDRRK-DLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD-----------ISKAQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
ACSL1_CAVPO8.323e-1331.46Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
4CLL2_ORYSJ8.323e-1330.384-coumarate--CoA ligase-like 2 OS=Oryza sativa sub... [more]
PKSJ_BACSU1.087e-1226.70Polyketide synthase pksJ OS=Bacillus subtilis GN=p... [more]
ACSA_RHILO1.087e-1226.85Acetyl-coenzyme A synthetase OS=Rhizobium loti GN=... [more]
MENE_STAAW1.420e-1227.542-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAU1.420e-1227.542-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAT1.420e-1227.542-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAS1.420e-1227.542-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAE1.420e-1227.542-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAC1.420e-1227.542-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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