CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO5E (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.564e-26
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G        +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYDAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO57 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 GN=caiC PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.564e-26
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G        +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYDAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ESCF3 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiC PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.573e-26
Identity = 71/216 (32.87%), Postives = 119/216 (55.09%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  P+ T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E           +LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPQATARVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GEILSEEEFFNFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKALK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOUT (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.573e-26
Identity = 72/216 (33.33%), Postives = 118/216 (54.63%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOK1 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O1:K1 / APEC GN=caiC PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.573e-26
Identity = 72/216 (33.33%), Postives = 118/216 (54.63%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO7I (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.573e-26
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++    R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFADR-RCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_PROMH (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus mirabilis (strain HI4320) GN=caiC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.120e-25
Identity = 71/214 (33.18%), Postives = 116/214 (54.21%), Query Frame = -2
Query:  272 RFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSP---SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 898
            R L  YGMTE ++ +     G  R+  ++G P    Q +I + ++     GV GEICVK     +LFKEY+  P  T+ +   DG+  TGD G QD++G++  + R S +++K GG  +S +EIE+++  HP + +  V+G+PD    +A+ A +VL +            LS +    + +  +A +K+P+ +     LPRN  GKV KK L+
Sbjct:  315 RLLTSYGMTETIVGLIGDRPGDKRRWPSIGRPGFCYQAQIRDKQNQQVPNGVVGEICVKGEPGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYQDDEGFFYFVDR-SCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVD---------GETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.462e-25
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG  DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.462e-25
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG  DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.462e-25
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG  DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
CAIC_ECO5E6.564e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO576.564e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ESCF38.573e-2632.87Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOUT8.573e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOK18.573e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO7I8.573e-2633.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_PROMH1.120e-2533.18Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]
CAIC_SHISS1.462e-2533.33Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOSE1.462e-2533.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOHS1.462e-2533.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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