CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.131e-12
Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = -2
Query:  380 GHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI--AEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSA----IIVLEEEAKRDQEKSKPVL-SLQELC 904
            G +  E YG TE     +    G   +G VG PLP   +K+  AE+ +     G GEICVK P++FK Y K    TK++  +DG+  TGD GK   +G   I+ R         G  ++  +IE++ +    VA+  V       +GD++ A    I+V + E      + K +  + QELC
Sbjct:  451 GCQVYEGYGQTECTAGCTFTTPGDWTSGHVGAPLPCNHIKLVDAEELNYWTCKGEGEICVKGPNVFKGYLKDEDRTKEALDSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYV-------HGDSLKAFLVGIVVPDPEVMPSWAQKKGIEGTYQELC 625          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: PPSD_BACSU (Plipastatin synthase subunit D OS=Bacillus subtilis GN=ppsD PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 62/212 (29.25%), Postives = 99/212 (46.70%), Query Frame = -2
Query:  275 YGMTEFVMAISNPLRGARKAG--TVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            YG TE  +A +  +R   K    ++G P+ G QV I          GV GE+C+    L + Y  LP++T+ +FT + F      ++TGD  +   DG    LGR   D +K+ GY++   EIESV+     V +  V+          +SA +V           +KP LS   + +  ++KL  +  P  +   DSLP +  GK+++  L
Sbjct: 2821 YGPTENSVA-TTVMRHMEKQAYVSIGQPIDGTQVLILNSNHQLQPIGVAGELCIAGTGLARGYVNLPELTERAFTQNPFKPEARMYRTGDAARWMADGTLEYLGRID-DQVKIRGYRVETKEIESVIRCIKGVKDAAVVAHVTASGQTELSAYVV-----------TKPGLSTNAVRSELQNKLPVFMHPAFIEKLDSLPLSPNGKLDRGAL 3019          

HSP 2 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 49/188 (26.06%), Postives = 86/188 (45.74%), Query Frame = -2
Query:  275 VGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 817
            +G P+    + I   +      GV GE+ +   S+ + Y    K+T D F++D F      ++TGD  ++ EDG    +GR    + K+ GY++   EIE  L+ HP ++E  +L   D++    + A              S   L+  +L ++   +L  Y +P +    DS+P    GKV++  L
Sbjct:  777 IGKPIGCTDLYILNHQKQLQPCGVPGELYISGASVARGYVNHDKLTSDKFSSDPFKPDVIMYRTGDLARRLEDGNIEYIGRADNQV-KIRGYRIEPQEIEVTLMNHPDISEAAILIWQDQNGEHELCAYYC-----------SVQKLNTIDLRSYMASELPEYMIPAKWIWVDSIPLTPNGKVDRAAL 952          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LGRA_BREPA (Linear gramicidin synthase subunit A OS=Brevibacillus parabrevis GN=lgrA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 58/213 (27.23%), Postives = 100/213 (46.95%), Query Frame = -2
Query:  275 YGMTEFVMAIS--NPLRGARKAGT-VGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFT------ADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            YG TE  +  S  +  +G++++   +G PLP  ++ I          GV GE+C+   SL + Y   P +T++ FT       +  ++TGD  +  EDG    LGR    + K+ GY++   EI S L++   + +  V+   D++    + A ++ E+E    Q        L+EL    + +L  Y +P    L    P  A GK+++K L
Sbjct: 1509 YGPTEATIYASRYSLAKGSQESPVPIGKPLPNYRMYIINRHGQLQPIGVPGELCIAGASLARGYLNNPALTEEKFTPHPLEKGERIYRTGDLARYREDGNIEYLGRMDHQV-KIRGYRIELDEIRSKLIQEETIQDAVVVARNDQNGQAYLCAYLLSEQEWTVGQ--------LREL---LRRELPEYMIPAHFVLLKQFPLTANGKLDRKAL 1709          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = -2
Query:  446 GHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI--AEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIV 904
            G +  E YG TE     +    G   +G VG PLP   +K+  AE+ +   + G GEICVK P++FK Y K    TK++  +DG+  TGD GK   +G   I+ R         G  ++  +IE++ +    VA+  V       +GD++ A +V
Sbjct:  451 GCQVYEGYGQTECTAGCTFTTPGDWTSGHVGAPLPCNHIKLVDAEELNYWTSKGEGEICVKGPNVFKGYLKDEDRTKEALDSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYV-------HGDSLKAFLV 598          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA2_PSEPK (Acetyl-coenzyme A synthetase 2 OS=Pseudomonas putida (strain KT2440) GN=acsA2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 59/217 (27.19%), Postives = 103/217 (47.47%), Query Frame = -2
Query:  272 LERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKS--PSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSL--QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 892
            ++ +  TE    +  PL G +  K G    P+ GVQ  +  DE G   +  G G + +K+  P   +  +   +   D++     G++ TGD  ++D DG Y I GR   D++ V G+++   E+ES L+ H +VAE  V+G P    G  V A +        D      +L+L  +E+ ++AK +L  +          +LP+   GK+ ++ L+
Sbjct:  406 VDTWWQTETGGIMLTPLPGTQSLKPGCATQPMFGVQ-PVLLDEKGKLIEGPGAGVLAIKASWPGQIRSVYGDHQRMVDTYFKPLPGYYFTGDGARRDADGDYWITGRID-DVINVSGHRIGTAEVESALVLHDSVAEAAVVGYPHDLKGQGVYAFVTTMNGVTPDDTLKAELLALVSKEIGSFAKPELIQWA--------PALPKTRSGKIMRRILR 612          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = -2
Query:  446 GHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIV 904
            G +  E YG TE     +    G   +G VG PLP   +K+ + E  +  A  G GEICV+ P++FK Y K P  TK++  +DG+  TGD GK    G   I+ R         G  ++  +IE++ +    VA+  V       +GD++ A +V
Sbjct:  451 GCQVYEGYGQTECTAGCTFTTPGDWTSGHVGAPLPCNHIKLVDVEELNYWACKGEGEICVRGPNVFKGYLKDPDRTKEALDSDGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYV-------HGDSLKAFLV 598          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: FAD11_MYCTU (Putative fatty-acid--CoA ligase fadD11 OS=Mycobacterium tuberculosis GN=fadD11 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 49/136 (36.03%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  488 ERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGL 889
            E +GM+E   V   S+P  G  + GTVG  LPG+Q KIAED         GE  V+ P + K Y K P  T ++  +DG+  TGD    D DGY  ++ R    I+   G  +S   IE+ +L     A C ++G+
Sbjct:  327 EIWGMSELSCVATASHPRDG--RLGTVGKLLPGLQGKIAED---------GEYLVRGPLVMKGYRKEPAKTAEAIDSDGWLHTGDVFDIDSDGYLRVVDRKKELIINAAGKNMSPANIENTIL-----AACPMVGV 446          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: PRPE_SALTY (Propionate--CoA ligase OS=Salmonella typhimurium GN=prpE PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 62/245 (25.31%), Postives = 112/245 (45.71%), Query Frame = -2
Query:  272 WETIT-GHRFLERYGMTEF---VMAISNPLRGA-RKAGTVGNPLPGVQVKIAEDESGSDAAGVGE---ICVKSP--------------SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIV-------LEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 919
            W T T G   ++ Y  TE    +MA++  L     + G+ G P+ G  V++  + +G +  G+ E   + ++ P                 K YW L       F     + T D G +D +GYY ILGRT  D++ + G++L   EIE  +  +P VAE  V+G+ D   G    A ++        + EA RD+E +  +++L +      +++  +  P  ++    LP+   GK+ ++ ++
Sbjct:  373 WVTETLGVPVIDNYWQTESGWPIMALARALDDRPSRLGSPGVPMYGYNVQLLNEVTG-EPCGINEKGMLVIEGPLPPGCIQTIWGDDARFVKTYWSL-------FNRQ-VYATFDWGIRDAEGYYFILGRTD-DVINIAGHRLGTREIEESISSYPNVAEVAVVGIKDALKGQVAVAFVIPKQSDTLADREAARDEENA--IMALVD------NQIGHFGRPAHVWFVSQLPKTRSGKMLRRTIQ 599          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: BGM_DROME (Very long-chain-fatty-acid--CoA ligase bubblegum OS=Drosophila melanogaster GN=bgm PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 57/231 (24.68%), Postives = 106/231 (45.89%), Query Frame = -2
Query:  230 RFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVL-LEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF-------LWDSLPRNAMGKVNKKELKNQLAAQQ*FNLVVH 898
            + ++ +GM+E     +  L  +    T+G  LPG + K        DA G GE+C++   +F  Y    + T++S   D +  +GD G  D+ GY  + GR+   I+  GG  +  + IE+ +  E  A++   ++G   K     ++ +I L+ E  +D  +    LS  E   W K     +K  + +        +W S+  +A+ + NK+ + N    Q+ F ++ H
Sbjct:  414 KIVDAFGMSETAGCHTICLPDSVGLNTIGKTLPGCESKFIN----KDANGHGELCIRGRHVFMGYIDNKEKTEESLDDDCWLHSGDLGFVDDKGYVSLTGRSKEIIITAGGENIPPVHIENTIKKELDAISNAFLVGEQRK----YLTVLITLKTEVDKDSGEPLDELS-HESSVWVKSLGVEHKTVSDILAAGPCPKVWKSI-EDAIKRANKQSISNAQKVQK-FTILPH 633          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: SRFAC_BACSU (Surfactin synthetase subunit 3 OS=Bacillus subtilis GN=srfAC PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.677e-11
Identity = 61/230 (26.52%), Postives = 104/230 (45.22%), Query Frame = -2
Query:  254 RFLERYGMTE---FVMA-ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL----KNQLAAQ 898
            + +  YG TE   F  A + + L  +  +  +G P+    V I  ++S     G VGE+C+    + K Y     +TK+ F  + F      ++TGD  +   DG     GR   D +K+ G+++   EIE  L E+P V +  V+    +    +++A +V           ++  LS +++    K +L  Y +P      D LP    GKVNK+ L    ++QLA +
Sbjct:  748 KLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID-DQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLV-----------NRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEE 965          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
ACSL6_MOUSE4.131e-1231.32Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]
PPSD_BACSU5.395e-1229.25Plipastatin synthase subunit D OS=Bacillus subtili... [more]
LGRA_BREPA5.395e-1227.23Linear gramicidin synthase subunit A OS=Brevibacil... [more]
ACSL6_RAT5.395e-1232.26Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSA2_PSEPK5.395e-1227.19Acetyl-coenzyme A synthetase 2 OS=Pseudomonas puti... [more]
ACSL6_HUMAN9.202e-1232.26Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
FAD11_MYCTU1.570e-1136.03Putative fatty-acid--CoA ligase fadD11 OS=Mycobact... [more]
PRPE_SALTY2.050e-1125.31Propionate--CoA ligase OS=Salmonella typhimurium G... [more]
BGM_DROME2.050e-1124.68Very long-chain-fatty-acid--CoA ligase bubblegum O... [more]
SRFAC_BACSU2.677e-1126.52Surfactin synthetase subunit 3 OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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