CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: SRFAB_BACSU (Surfactin synthetase subunit 2 OS=Bacillus subtilis GN=srfAB PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 59/212 (27.83%), Postives = 91/212 (42.92%), Query Frame = -2
Query:  275 YGMTEFVMAISNPLRGARKAGTV--GNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            YG TE     ++ L      G++  G P+      I +++      G  GE+CV    + + Y  LP++T+  F  D F      ++TGD  +   DG    LGR    + KV G+++   EIE+ L     V E  V+   +K   + + A    + E           +++ EL       L  Y +P  L   DSLP    GK+NKKEL
Sbjct:  752 YGPTENTTFSTSFLIDREYGGSIPIGKPIGNSTAYIMDEQQCLQPIGAPGELCVGGIGVARGYVNLPELTEKQFLEDPFRPGERIYRTGDLARWLPDGNIEFLGRIDNQV-KVRGFRIELGEIETKLNMAEHVTEAAVIIRKNKADENEICAYFTADRE-----------VAVSELRKTLSQSLPDYMVPAHLIQMDSLPLTPNGKINKKEL 951          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_RHILW (Acetyl-coenzyme A synthetase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=acsA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 55/214 (25.70%), Postives = 98/214 (45.79%), Query Frame = -2
Query:  272 LERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESGS-DAAGVGEICVKSP---SLFKEYWKLPKVTKDSF-TADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 892
            ++ +  TE    +  PL GA   K G+   P  G++ ++ ++E    + A  G +C+       +   Y    +  +  F T  G + TGD  ++D DGYY I GR   D++ V G++L   E+ES L+ H  V+E  V+G P    G  +   + L        E +  +   Q+L    + ++ P   P ++     LP+   GK+ ++ L+
Sbjct:  410 IDTWWQTETGGHMITPLPGAIDLKPGSATVPFFGIKPELVDNEGKVLEGAADGNLCITDSWPGQMRTVYGDHDRFIQTYFSTYKGKYFTGDGCRRDADGYYWITGRVD-DVLNVSGHRLGTAEVESALVSHNLVSEAAVVGYPHPIKGQGIYCYVTL----MAGHEGTDTL--RQDLVKHVRAEIGPIAAPDKIQFAPGLPKTRSGKIMRRILR 616          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_SALTY (2-succinylbenzoate--CoA ligase OS=Salmonella typhimurium GN=menE PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 53/204 (25.98%), Postives = 96/204 (47.06%), Query Frame = -2
Query:  272 YGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 883
            YG+TEF   +    + A  +  VG PLPG +++I ++E          + +++ S+ + YW+  K+       +G+F T D G+ +  G   I GR   ++   GG  +   E+E V+  HP V +  V+ + DK++G    A++    +A               L  W +DKLA ++ P R     S  +N   K++++ L+
Sbjct:  269 YGLTEFASTVC--AKEADGSDDVGAPLPGREIRIVDNE----------VWLRAASMAEGYWRDGKLIP-LVNDEGWFATRDRGELNH-GRLTIAGRLD-NLFFSGGEGIQPEEVERVINAHPLVQQAFVVPVEDKEFGHRPVAVVEYASQA-----------GDVNLAEWVRDKLARFQQPVRWLTMPSELKNGGIKISRRALQ 446          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACBG1_MOUSE (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Mus musculus GN=Acsbg1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 45/144 (31.25%), Postives = 74/144 (51.39%), Query Frame = -2
Query:  386 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEI-ESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQE 814
            G  +PG +VK+       DA G+GEIC+   ++F  Y  +   T ++  ++G+  TGD G+ D DG+  I GR    I+  GG  +  + I E+V +E P ++   ++G    D    +S ++ L  +   D E S+P  SL E
Sbjct:  494 GRVVPGCRVKLVNQ----DADGIGEICLWGRTIFMGYLNMEDKTCEAIDSEGWLHTGDMGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISSAMLIG----DQRKFLSMLLTL--KCTLDPETSEPTDSLTE 627          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACBG1_BOVIN (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos taurus GN=ACSBG1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = -2
Query:  491 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEI-ESVLLEHPAVAECCVLG 814
            G  +PG QVK+  +    DA G+GEIC+   ++F  Y  +   T ++  A+G+  TGDTG+ D DG+  I GR    I+  GG  +  + I E+V  E P +    ++G
Sbjct:  480 GKVVPGCQVKLVNE----DAEGIGEICLWGRTIFMGYLNMEDKTCEAIDAEGWLHTGDTGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKTELPIIRNAMLIG 584          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: SRFAA_BACSU (Surfactin synthetase subunit 1 OS=Bacillus subtilis GN=srfAA PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 60/225 (26.67%), Postives = 98/225 (43.56%), Query Frame = -2
Query:  275 ETITGHRFLERYGMTEF-VMAISNPLRGARK---AGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 916
            +T+   + L  YG +E  V A  +P+    +   +  +G P+   +V I +       AG+ GE+CV    L K Y+  P++T++ F    F      +KTGD  +   +G    +GR    + K+ G ++   EIE  L  H  V E  VL + D+  GD +     + E            +S QE+   A   L  Y +P      D LP    GK++++ L
Sbjct: 1783 QTVGKGKLLHMYGPSESTVFATYHPVDELEEHTLSVPIGKPVSNTEVYILDRTGHVQPAGIAGELCVSGEGLVKGYYNRPELTEEKFVPHPFTSGERMYKTGDLARWLPNGDIEFIGRIDHQV-KIRGQRIELGEIEHQLQTHDRVQESVVLAV-DQGAGDKLLCAYYVGEGD----------ISSQEMREHAAKDLPAYMVPAVFIQMDELPLTGNGKIDRRAL 1995          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MYCA_BACSU (Mycosubtilin synthase subunit A OS=Bacillus subtilis GN=mycA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 54/214 (25.23%), Postives = 96/214 (44.86%), Query Frame = -2
Query:  275 YGMTEFVMAIS----NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 883
            YG TE V+       +  R  R+   +G+P     + + +        GV GE+ +    + + YW  P +T + F  + F      +KTGD  K+  DG  I LGR    + K+ G+++   E+E+ + +  AV +  VL   ++D    + A  V           +KP+ ++ E+      +L  Y +P+     + LP  + GK+N+K L
Sbjct: 3226 YGPTEAVVGCMIYRYDTKRDRREFVPIGSPAANTSIYVLDASMNLVPVGVPGEMYIGGAGVARGYWNRPDLTAEKFVHNPFAPGTIMYKTGDLAKRLRDGNLIYLGRIDEQV-KIRGHRIELGEVEAAMHKVEAVQKAVVLAREEEDGLQQLCAYYV----------SNKPI-TIAEIREQLSLELPDYMVPSHYIQLEQLPLTSNGKINRKAL 3427          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSA_MAGSM (Acetyl-coenzyme A synthetase OS=Magnetococcus sp. (strain MC-1) GN=acsA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 60/222 (27.03%), Postives = 103/222 (46.40%), Query Frame = -2
Query:  251 LERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESGSDAAGVGE-ICVKS---PSLFKEYWKLPKVTKDSFTAD--GFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 892
            ++ +  TE    +  PL GA   K G+   P  GV  K+  +E G +  G  E I V     P + +  +       +++ A+  G++  GD  ++DEDGYY I GR   D++ V G++L   E+ES L+ H  VAE  V+G+P +  G  + A + L    +             EL    + ++ P      +     LP+   GK+ ++ L+ ++AA +
Sbjct:  407 VDTWWQTETGGILITPLPGATPLKPGSATRPFFGVNPKVLSNE-GKEMEGPCEGILVLDHPWPGMMRTVYGDHDRFINTYFANYPGYYFCGDGCRRDEDGYYWITGRVD-DVINVSGHRLGTAEVESALVLHDQVAEAAVVGMPHEIKGQGIYAYVTLMSGVEPSDALK------TELVKLVRKEIGPIASLDVIQFAPGLPKTRSGKIMRRILR-KIAAHE 619          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
SRFAB_BACSU3.497e-1127.83Surfactin synthetase subunit 2 OS=Bacillus subtili... [more]
ACSA_RHILW3.497e-1125.70Acetyl-coenzyme A synthetase OS=Rhizobium legumino... [more]
MENE_SALTY4.567e-1125.982-succinylbenzoate--CoA ligase OS=Salmonella typhi... [more]
ACBG1_MOUSE4.567e-1131.25Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Mus mu... [more]
ACBG1_BOVIN4.567e-1134.86Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos ta... [more]
SRFAA_BACSU5.965e-1126.67Surfactin synthetase subunit 1 OS=Bacillus subtili... [more]
MYCA_BACSU7.790e-1125.23Mycosubtilin synthase subunit A OS=Bacillus subtil... [more]
ACSA_MAGSM7.790e-1127.03Acetyl-coenzyme A synthetase OS=Magnetococcus sp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
back to top