CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO24 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.462e-25
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG  DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.910e-25
Identity = 71/216 (32.87%), Postives = 118/216 (54.63%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAI-SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I  +     R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPSDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLU (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.910e-25
Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = -2
Query:  272 RFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 898
            R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  314 RLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLC (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiC PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.910e-25
Identity = 71/216 (32.87%), Postives = 118/216 (54.63%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  P+ T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL6 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6 GN=caiC PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.910e-25
Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = -2
Query:  272 RFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 898
            R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  314 RLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL5 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.910e-25
Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = -2
Query:  272 RFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 898
            R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  314 RLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM1_MOUSE (Acyl-coenzyme A synthetase ACSM1, mitochondrial OS=Mus musculus GN=Acsm1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.494e-25
Identity = 79/228 (34.65%), Postives = 117/228 (51.32%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS----DAAGVGEICVKSP---SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEE-AKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            +QW+  TG    E YG +E  ++ +       K G++G  +    ++I  DE G+    +  G   I +K      LF EY   P+ T +    D F+ +GD    DE+GY   LGR   D++   GY++  +E+E+ L EHPAVAE  V+  PDKD G+ V A IVL  E    DQE+      ++EL    K   APYK P ++     LP+   GK+ +KEL+N+
Sbjct:  349 EQWKQRTGLSIHEVYGQSETGISSATLREMKIKRGSIGKAILPFDLQII-DEKGNILPPNTEGYIGIRIKPTRPLGLFMEYENSPESTSEVECGD-FYNSGDRATIDEEGYIWFLGRGD-DVINASGYRIGPVEVENALAEHPAVAESAVVSSPDKDRGEVVKAFIVLNPEFLSHDQEQ-----LIKELQHHVKSVTAPYKYPRKVEFVSELPKTVTGKIKRKELRNK 568          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO8A (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O8 (strain IAI1) GN=caiC PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.258e-25
Identity = 71/216 (32.87%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG  DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +V+ E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVVNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO45 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.255e-25
Identity = 71/216 (32.87%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G   L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVSLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM1_HUMAN (Acyl-coenzyme A synthetase ACSM1, mitochondrial OS=Homo sapiens GN=ACSM1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.255e-25
Identity = 78/231 (33.77%), Postives = 113/231 (48.92%), Query Frame = -2
Query:  254 QQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESG------SDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEE-AKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 925
            ++W+  TG    E YG +E  +  +       K G +G   P   V++ +D+            G+    V+  SLF  Y   P+ T      D F+ TGD GK DE+GY   LGR S DI+   GY++   E+ES L+EHPAVAE  V+G PD   G+ V A IVL  +    D+++       +EL    K   APYK P ++     LP+   GK+ +KEL+ +   Q
Sbjct:  353 EEWKRRTGLLLYENYGQSETGLICATYWGMKIKPGFMGKATPPYDVQVIDDKGSILPPNTEGNIGIRIKPVRPVSLFMCYEGDPEKTAKVECGD-FYNTGDRGKMDEEGYICFLGR-SDDIINASGYRIGPAEVESALVEHPAVAESAVVGSPDPIRGEVVKAFIVLTPQFLSHDKDQ-----LTKELQQHVKSVTAPYKYPRKVEFVSELPKTITGKIERKELRKKETGQ 576          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
CAIC_ECO241.462e-2533.33Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SHIFL1.910e-2532.87Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOLU1.910e-2533.18Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOLC1.910e-2532.87Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOL61.910e-2533.18Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOL51.910e-2533.18Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
ACSM1_MOUSE2.494e-2534.65Acyl-coenzyme A synthetase ACSM1, mitochondrial OS... [more]
CAIC_ECO8A3.258e-2532.87Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO454.255e-2532.87Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
ACSM1_HUMAN4.255e-2533.77Acyl-coenzyme A synthetase ACSM1, mitochondrial OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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