CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO55 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.557e-25
Identity = 71/216 (32.87%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAI-SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I  +     R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG  DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPSDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM4_MOUSE (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Mus musculus GN=Acsm4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.557e-25
Identity = 75/227 (33.04%), Postives = 112/227 (49.34%), Query Frame = -2
Query:  266 MQQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPS-----LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 928
            ++QW+  TG    E YG TE  +  +N    A K G++G  +    V+I ++      +G  GEI ++  S      F EY   P+ T D+     F+ TGD G  D+DGY+  +GR   D++   GY++   E+ES L+EHPAV E  V+  PD   G+ V A IVL    K    +        EL    K+  APYK P ++     LP+   GK+ +  L++Q
Sbjct:  355 LEQWKMQTGLELYEGYGQTEVGIICANRKGEAIKPGSMGKGVVPYDVQIIDENGNILPSGKEGEIALRLKSDRPFCFFSEYVDNPEKT-DATIRRNFYVTGDRGVMDDDGYFWFVGRAD-DVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPYKCSNREKLTA----ELQDHVKNSTAPYKYPRKVEFVQELPKTITGKIKRNVLRDQ 575          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.258e-25
Identity = 71/216 (32.87%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDTG +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+ + L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGQAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDR-RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFCFCEQNMAKFKVLSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_SALAR (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.479e-25
Identity = 69/227 (30.40%), Postives = 125/227 (55.07%), Query Frame = -2
Query:  272 MQQWETIT---GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 928
            +Q+ E  T   G R    YGMTE ++ I     G  R+  ++G P    + +I  +++ +   G +GEIC+K     +LFK Y++ P  T  +   +G+  TGD+G +DE+G++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            L+ ++  T+ ++ +A +K+P+ L + + LPRN  GK+ KK LK
Sbjct:  301 VQEKEAFTERFGVRLFTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRNEQNRALPPGEIGEICIKGIPGKTLFKSYFERPDATAKALEPNGWLHTGDSGYRDEEGFFYFVDRR-CNMVKRGGENVSCVELENIIAGHPKIQDVVVIGIKDDIRDEAIKAFVVLNE---------GETLTEEDFFTFCEENMAKFKVPSYLEIREDLPRNCSGKIIKKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_PROSL (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus sp. (strain LE138) GN=caiC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.238e-24
Identity = 69/214 (32.24%), Postives = 116/214 (54.21%), Query Frame = -2
Query:  272 RFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPS---LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 898
            R L  +GMTE ++ +     G  R+  ++G P    Q +I + ++     GV GEICVK  +   LFKEY+  P  T+ +   DG+  TGD G +D++G++  + R S +++K GG  +S +EIE+++  HP + +  V+G+PD    +A+ A +VL +            LS +    + +  +A +K+P+ +     LPRN  GKV KK L+
Sbjct:  315 RLLTSHGMTETIVGLIGDRPGDKRRWPSIGRPGFCYQAQIRDKQNQQVPNGVVGEICVKGEAGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYRDDEGFFYFVDR-SCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVD---------GETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLI (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12) GN=caiC PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.238e-24
Identity = 70/216 (32.41%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  P+ T     ADG+  TGDTG +DE+ ++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDR-RCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECODH (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12 / DH10B) GN=caiC PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.238e-24
Identity = 70/216 (32.41%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  P+ T     ADG+  TGDTG +DE+ ++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDR-RCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: CAIC_ECOBW (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12 / BW2952) GN=caiC PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.238e-24
Identity = 70/216 (32.41%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  272 GHRFLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 904
            G R L  YGMTE ++ I     G  R+  ++G      + +I +D +    AG +GEIC+K     ++FKEY+  P+ T     ADG+  TGDTG +DE+ ++  + R   +++K GG  +S +E+E+++  HP + +  V+G+ D    +A+ A +VL E            LS +E   + +  +A +K+P+ L +   LPRN  GK+ +K LK
Sbjct:  312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDR-RCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNE---------GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: YDAB_BACSU (Putative acyl--CoA ligase ydaB OS=Bacillus subtilis GN=ydaB PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.758e-24
Identity = 72/209 (34.45%), Postives = 115/209 (55.02%), Query Frame = -2
Query:  266 YGMTE-FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 883
            YG TE + ++   P  G  KA + G P+ GV+VK+ +  +G +     +GEI V +P LFK Y   P+ T      +G+F+TGD+G  DEDG+  I GR   D++  GG  +   ++E V+ + P + E  V+G+PD  YG+   A IV     +  +E         ++  + K++L+ YK+P   F+ + LP+N +GKV K  L+NQ
Sbjct:  303 YGSTEAWGISTWTPDMGMDKAASAGKPVAGVKVKVEDPLTGEELPQGEIGEIVVHTPFLFKGYEDNPEATA-KVLQNGWFRTGDSGYVDEDGFIFITGRYK-DVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVKNGGQRITEE---------DVIAFCKERLSAYKIPEVEFV-NELPKNNLGKVKKDVLRNQ 499          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM5_MOUSE (Acyl-coenzyme A synthetase ACSM5, mitochondrial OS=Mus musculus GN=Acsm5 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.758e-24
Identity = 78/226 (34.51%), Postives = 110/226 (48.67%), Query Frame = -2
Query:  266 QWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK-SPS----LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEE-AKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 922
            +W++ TG    E YG +E V+   N      K+G++G   P   V+I ++E      G  G I V+  P+     F  Y   P+ T  S   D F+ TGD    DEDGY+  LGR   D++    Y++  +E+ES L EHPAV E  V+  PD   G+ V A IVL    A  D     P    +EL    K   APYK P ++     LP+   GK+ + +L+NQ
Sbjct:  356 KWKSQTGLELHEGYGQSETVVICGNSRNSTIKSGSMGKASPPYDVQIVDEEGNVLPPGKEGNIAVRIKPTRPFCFFNCYLDNPEKTAASEQGD-FYITGDRAHMDEDGYFWFLGRND-DVINSSSYRIGPVEVESALAEHPAVLESAVVSSPDPIRGEVVKAFIVLSPAYASHD-----PEALTRELQEHVKTVTAPYKYPRKVAFISELPKTVSGKILRSKLRNQ 574          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
CAIC_ECO555.557e-2532.87Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
ACSM4_MOUSE5.557e-2533.04Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
CAIC_ECO277.258e-2532.87Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SALAR9.479e-2530.40Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_PROSL1.238e-2432.24Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]
CAIC_ECOLI1.238e-2432.41Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECODH1.238e-2432.41Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOBW1.238e-2432.41Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
YDAB_BACSU2.758e-2434.45Putative acyl--CoA ligase ydaB OS=Bacillus subtili... [more]
ACSM5_MOUSE2.758e-2434.51Acyl-coenzyme A synthetase ACSM5, mitochondrial OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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