CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM5_HUMAN (Acyl-coenzyme A synthetase ACSM5, mitochondrial OS=Homo sapiens GN=ACSM5 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.602e-24
Identity = 74/226 (32.74%), Postives = 111/226 (49.12%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK-SPS----LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            ++W+  TG    E YG +E V+  +NP     K+G++G   P   V+I +DE      G  G + V+  P+     F  Y   P+ T  S   D F+ TGD  + D+DGY+  +GR   D++    Y++  +E+ES L EHPAV E  V+  PD   G+ V A IVL            P    +EL    K   APYK P ++     LP+   GK+ + +L++Q
Sbjct:  356 EKWKHQTGVELYEGYGQSETVVICANPKGMKIKSGSMGKASPPYDVQIVDDEGNVLPPGEEGNVAVRIRPTRPFCFFNCYLDNPEKTAASEQGD-FYITGDRARMDKDGYFWFMGRND-DVINSSSYRIGPVEVESALAEHPAVLESAVVSSPDPIRGEVVKAFIVLTPA----YSSHDPEALTRELQEHVKRVTAPYKYPRKVAFVSELPKTVSGKIQRSKLRSQ 575          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM4_RAT (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Rattus norvegicus GN=Acsm4 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.602e-24
Identity = 75/227 (33.04%), Postives = 112/227 (49.34%), Query Frame = -2
Query:  266 MQQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPS-----LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 928
            ++QW+  TG    E YG TE  +  +N      K G++G  +    V+I ++      +G  GEI ++  S      F EY   P+ T D+     F+ TGD G  D+DGY   +GR   D++   GY++   E+ES L+EHPAV E  V+  PD   G+ V A IVL    K    + K    LQ+     K+  APYK P ++     LP+   GK+ +  L++Q
Sbjct:  355 LEQWKAQTGLELYEGYGQTEVGIICANRKGEEIKPGSMGKGVVPYDVQIIDEHGNILPSGKEGEIALRLGSDRPFCFFSEYVDNPEKT-DATIRRNFYITGDRGVMDDDGYLWFVGRAD-DVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPFK-SSNREKLTAELQD---HVKNSTAPYKYPRKVEFVQELPKTITGKIKRNVLRDQ 575          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM4_HUMAN (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Homo sapiens GN=ACSM4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.602e-24
Identity = 75/227 (33.04%), Postives = 111/227 (48.90%), Query Frame = -2
Query:  266 MQQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK-SPS----LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 928
            ++QW   TG    E YG TE  M  +N      K G++G  +    V+I ++       G  GEI ++  P+     F +Y   P+ T  +   D F+ TGD G  D DGY+  +GR   D++   GY++   E+ES L+EHPAV E  V+  PD+  G+ V A +VL    K      K  L LQ+     K   APYK P ++     LP+   GK+ +  L++Q
Sbjct:  355 LEQWRVQTGLELYEGYGQTEVGMICANQKGQEIKPGSMGKGMLPYDVQIIDENGNVLPPGKEGEIALRLKPTRPFCFFSKYVDNPQKTAATIRGD-FYVTGDRGVMDSDGYFWFVGRAD-DVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDQIRGEVVKAFVVLAAPFK-SYNPEKLTLELQD---HVKKSTAPYKYPRKVEFVQELPKTITGKIKRNVLRDQ 575          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_LISMO (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes GN=menE PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.704e-24
Identity = 76/211 (36.02%), Postives = 110/211 (52.13%), Query Frame = -2
Query:  266 LERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 892
            ++ +GMTE    I    P     K G+ G  L   +VKIA+D         GEI +K PS+   Y    K T+ SF  DG+FKTGD G  DE+G+  ++ R S D++  GG  +   EIE V+ E+ AV E  V+G PD  +G    A IV EE    D+        LQ +C   +  LA YK+P ++ + + LP+ A GK+ + +LK +
Sbjct:  276 VQSFGMTETASQIVTLPPKDALNKIGSSGKALFPAEVKIADD---------GEILLKGPSITPGYLHNKKATEASFV-DGWFKTGDIGYLDEEGFLFVVERRS-DLIISGGENIYPTEIEHVIGEYVAVKEVAVIGQPDDKWGSVPVAFIVAEETFDEDE--------LQLIC---QTNLASYKIPKQIIIVEKLPKTASGKIQRNKLKER 464          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.144e-24
Identity = 67/210 (31.90%), Postives = 112/210 (53.33%), Query Frame = -2
Query:  275 LERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 892
            L+ YG+TE   + A ++    +R+ GT G   P  + KI + +SG        GE+ ++ P + K Y+K  + T+ + T DG+ KTGD    DEDGY  ++ R   +++K  GY++   E+E++LL HP V +  V+  PD++ G    A IV          K    LS +E+  +   ++APYK   ++     +P+NA GK+ +K+L
Sbjct:  345 LQGYGLTESTAIGASTDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFKNAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLK-ELIKYKGYQVPPAELEALLLTHPEVTDVAVIPFPDREVGQFPMAYIV---------RKKGSNLSEREVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKILRKDL 544          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM1_BOVIN (Acyl-coenzyme A synthetase ACSM1, mitochondrial OS=Bos taurus GN=ACSM1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.048e-23
Identity = 77/233 (33.05%), Postives = 116/233 (49.79%), Query Frame = -2
Query:  251 QQWETITGHRFLERYGMTEFVMAISNPLRGAR-KAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSP-----SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEE-AKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 925
            +QW+  TG    + YG +E  ++    LRG + K G++G  +P   ++I +D+         G I ++        LF  Y   P+ T +    D F+ TGD    DE+GY+  LGR S D++   GY++   E+E+ L EHPAVAE  V+  PD   G+ V A IVL  E + RD     P    +EL    K   APYK P ++     LP+   GK+ + EL+ +   Q+
Sbjct:  353 EQWKRQTGVLLYQAYGQSETGISCGT-LRGMKIKPGSMGKAIPPFDIQIIDDKGNIQPPNTEGNIGIRIKPTRPIGLFMYYENNPEKTAEVECGD-FYNTGDRATIDEEGYFWFLGR-SDDVINASGYRVGPAEVENALAEHPAVAESAVVSSPDPVRGEVVKAFIVLNPEFSSRD-----PGELTKELQQHVKSVTAPYKYPRKVEFVSELPKTITGKIKRSELRKKEFGQK 577          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_GEOSW (2-succinylbenzoate--CoA ligase OS=Geobacillus sp. (strain WCH70) GN=menE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.369e-23
Identity = 76/208 (36.54%), Postives = 108/208 (51.92%), Query Frame = -2
Query:  272 ERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 889
            + YGMTE    I+   P     K G+ G PL   Q++I +D   +     GEI VK P++ K Y   P  T  +    G+F TGD G  DEDG+  +L R S D++  GG  +   EIE+VLL H AV E  V G+ D+ +G    A +      KR +  S  V  L++ C   +  LA YK+P +++  D LPRNA  K+ + +LK
Sbjct:  285 QTYGMTETASQIATLAPEYSLTKLGSAGKPLFPSQLRIEKDGQVARPYEPGEIVVKGPNVTKGYLHRPDATAKAIRG-GWFYTGDIGYIDEDGFLYVLDRRS-DLIISGGENVYPAEIEAVLLSHEAVEEAGVTGIDDETWGQVPCAFV------KRKRGYSVTVEQLKQFC---QAHLAKYKIPKQIYFVDELPRNASQKLLRHQLK 481          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: MENE_BACA2 (2-succinylbenzoate--CoA ligase OS=Bacillus amyloliquefaciens (strain FZB42) GN=menE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.369e-23
Identity = 71/207 (34.30%), Postives = 107/207 (51.69%), Query Frame = -2
Query:  275 ERYGMTEFVMAIS--NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 889
            + YG+TE    I   +P     K G+ G PL   +++I +D +       GEI VK P++ K Y+      + +F  +G+FKTGD G  D++G+  +L R S D++  GG  +   E+E+ LL HPAVAE  V G  D  +G    A +VL              +S +EL  + +++LA YK+P   F  D LPRNA  K+ +  L
Sbjct:  285 QSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCAPFEHGEITVKGPNVMKGYYHRDDANQAAFH-NGWFKTGDLGYLDDEGFLYVLDRRS-DLIISGGENIYPAEVEAALLAHPAVAEAGVSGSEDPKWGKVPHAFLVLTSS-----------VSSEELTAFCRERLAKYKIPAAFFEVDGLPRNASNKLMRHRL 478          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM3_PONAB (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Pongo abelii GN=ACSM3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.369e-23
Identity = 74/227 (32.60%), Postives = 109/227 (48.02%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICV-----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAK-RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            ++W   TG    E YG TE V+   N      K G++G P P   VKI +        G  G+I +     +   LF  Y   P  T  +   + F+ TGD G  DEDGY+  + R   D++   GY++   E+E+ L EHP+VAE  V+  PD   G+ V A +VL  + K  DQE+      ++E+    K   APYK P ++     LP+   GK  + EL+ +
Sbjct:  362 EKWRNKTGLDIYEGYGQTETVLICGNFKGMKIKPGSMGKPSPAFDVKIVDVNGNVLPPGQEGDIGIQVLPNRPFGLFTHYVDNPSKTASTLRGN-FYITGDRGYMDEDGYFWFVARAD-DVILSSGYRIGPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHDQEQ-----LIKEIQEHVKKTTAPYKYPRKVEFIQELPKTISGKTKRNELRKK 581          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSM5_RAT (Acyl-coenzyme A synthetase ACSM5, mitochondrial OS=Rattus norvegicus GN=Acsm5 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 75/225 (33.33%), Postives = 108/225 (48.00%), Query Frame = -2
Query:  266 QWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK-SPS----LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 922
            +W+  TG    E YG +E V+   N      K+G++G   P   V+I ++E      G  G I ++  P+    LF  Y   P+ T  S   D F+ TGD    DEDGY+  +GR   D++    Y++  +E+ES L EHPAV E  V+  PD   G+ V A IVL            P    +EL    K   APYK P ++     LP+   GK+ + +L+NQ
Sbjct:  356 KWKNQTGLEIHEGYGQSETVLICGNFRGSTIKSGSMGKASPPYDVQIVDEEGNVLPPGKEGNIAIRIKPTRPFCLFNCYLDNPEKTAASEQGD-FYITGDRAHMDEDGYFWFVGRND-DVINSSSYRIGPVEVESALAEHPAVLESAVVSSPDPIRGEVVKAFIVLSPA----YVSHDPEALTRELQEHVKTVTAPYKYPRKVAFISELPKTVSGKILRSKLRNQ 574          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
ACSM5_HUMAN3.602e-2432.74Acyl-coenzyme A synthetase ACSM5, mitochondrial OS... [more]
ACSM4_RAT3.602e-2433.04Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
ACSM4_HUMAN3.602e-2433.04Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
MENE_LISMO4.704e-2436.022-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
4CLL4_ORYSJ6.144e-2431.904-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
ACSM1_BOVIN1.048e-2333.05Acyl-coenzyme A synthetase ACSM1, mitochondrial OS... [more]
MENE_GEOSW1.369e-2336.542-succinylbenzoate--CoA ligase OS=Geobacillus sp. ... [more]
MENE_BACA21.369e-2334.302-succinylbenzoate--CoA ligase OS=Bacillus amyloli... [more]
ACSM3_PONAB1.369e-2332.60Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
ACSM5_RAT1.788e-2333.33Acyl-coenzyme A synthetase ACSM5, mitochondrial OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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