CV884835

Overview
NameCV884835
Unique NameCV884835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10005 contig Csv1_Contig10005:22..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBPW_MOUSE (Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus musculus GN=Dub1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 59/189 (31.22%), Postives = 86/189 (45.50%), Query Frame = -2
Query:  220 SALSDIFGGQLKSVVKAH-GNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 780
            S + DIFGG  +S +K       S T   FL + +DI S    +++ AL      E L G      G     + A K++ +    K+L++ L RFS  +    KL + V +P  L L +  L  P+     Y L A + H G     GHY    +  + +W   DD  VT    + VL++ AYVLFY Q
Sbjct:  164 SPIHDIFGGWWRSQIKCLLCQGTSDTYDRFLDIPLDISS--AQSVKQALWDTEKSEELCGDNAYYCGKCRQKMPASKTLHVHIAPKVLMVVLNRFSAFT--GNKLDRKVSYPEFLDL-KPYLSEPTGGPLPYALYAVLVHDGATSHSGHYFCCVKAGHGKWYKMDDTKVTRCDVTSVLNENAYVLFYVQ 347          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP51_HUMAN (Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 47/165 (28.48%), Postives = 76/165 (46.06%), Query Frame = -2
Query:  226 DIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA---EGR----------KYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 678
            D +   + ++ D L+ F+ PE+L    +           + K + ++ L  +   HL RF +  +   K++  + FPL+L +   L  T  +   EG+          KY L A + HHG   S GHYT+  R   DQW   DDA +T      +L+ + Y+LFY
Sbjct:  540 DDHIPGIPSLTDCLQWFTRPEHLGSSAKIKCNSCQSYQESTKQLTMKKLPIVACFHLKRFEHVGKQRRKINTFISFPLELDMTPFLASTKESRMKEGQPPTDCVPNENKYSLFAVINHHGTLES-GHYTSFIRQQKDQWFSCDDAIITKATIEDLLYSEGYLLFY 703          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP21_HUMAN (Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 60/193 (31.09%), Postives = 86/193 (44.56%), Query Frame = -2
Query:  223 SALSDIFGGQLKSVVKAHG-NKASATVQPFLLLHIDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 780
            S + D+F GQLKS +K       S T + F  L + I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +  A    Y+L A   H G     GHYT   R     W  ++D+ V+ +  ++V   + YVLFY+
Sbjct:  368 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP21_BOVIN (Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 60/193 (31.09%), Postives = 86/193 (44.56%), Query Frame = -2
Query:  223 SALSDIFGGQLKSVVKAHG-NKASATVQPFLLLHIDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 780
            S + D+F GQLKS +K       S T + F  L + I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +  A    Y+L A   H G     GHYT   R     W  ++D+ V+ +  ++V   + YVLFY+
Sbjct:  368 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP12_YEAST (Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces cerevisiae GN=UBP12 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 51/155 (32.90%), Postives = 73/155 (47.10%), Query Frame = -2
Query:  226 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAK------KSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFY 666
            E   T++D L+LFS PE L       T +    T K      K +++     IL++HL RF      S K+  +V FP+  L L R ++      G  Y+L A   H+G     GHYT   + F D +W +FDD+ VT       +   AY+LFY
Sbjct:  959 ERTITLDDCLQLFSKPEIL-----GLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYG-GLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFY 1107          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP21_MOUSE (Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 60/193 (31.09%), Postives = 86/193 (44.56%), Query Frame = -2
Query:  223 SALSDIFGGQLKSVVKAHG-NKASATVQPFLLLHIDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 780
            S + D+F GQLKS +K       S T + F  L + I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +  A    Y+L A   H G     GHYT   R     W  ++D+ V+ +  ++V   + YVLFY+
Sbjct:  369 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 557          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP8_ARATH (Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 43/117 (36.75%), Postives = 57/117 (48.72%), Query Frame = -2
Query:  217 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 564
            A K + +  L +IL++HL RFSY      KL   V FPL  L L   +         +Y L A   H+G     GHYT    +  D+W  FDD+ V  I   K+    AYVLFYK++
Sbjct:  754 AIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYG-SMGGGHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRL 869          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP5_ARATH (Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = -2
Query:  220 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 564
            A K + +  L ++L++HL RFSY      KL   V FP+  L L + +     ++ + YEL A   H+G     GHYT   +  +D +W +FDD+ ++ I    V    AYVLFY++
Sbjct:  800 ASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYG-GMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP46_DANRE (Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio rerio GN=usp46 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 64/203 (31.53%), Postives = 93/203 (45.81%), Query Frame = -2
Query:  223 PSALSDIFGGQLKSVVKA-HGNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 783
            P+ + +IF G L +  +  +    S+  + FL L +D+  E   +I   LR FS  E L   Y+           A+K ++++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY T  +  +  WL FDD  V  I    +              +  Y+LFY+
Sbjct:  169 PTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDV--EQNTSITHCLRDFSNTETLCSEYKYYCEMCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSGDAVNLD-RMYDLVAVVVHCGSGPNRGHYITIVK-SHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 367          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP12_HUMAN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 65/203 (32.02%), Postives = 92/203 (45.32%), Query Frame = -2
Query:  223 PSALSDIFGGQLKSVVKAHGNKA-SATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 783
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY    +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 367          
The following BLAST results are available for this feature:
BLAST of CV884835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBPW_MOUSE2.493e-1131.22Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus... [more]
UBP51_HUMAN3.256e-1128.48Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo s... [more]
UBP21_HUMAN4.252e-1131.09Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo s... [more]
UBP21_BOVIN4.252e-1131.09Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos ta... [more]
UBP12_YEAST4.252e-1132.90Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccha... [more]
UBP21_MOUSE5.553e-1131.09Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus mu... [more]
UBP8_ARATH7.253e-1136.75Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabido... [more]
UBP5_ARATH7.253e-1134.19Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabido... [more]
UBP46_DANRE9.473e-1131.53Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio ... [more]
UBP12_HUMAN9.473e-1132.02Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884835 ID=CV884835; Name=CV884835; organism=Citrus sinensis; type=EST; length=883bp
AATGAAGCTTTCATTAATTTAACTTTATCAAGAACTTCCACTCATTTTCA
TTTTCATATCACATCAGTAAAATTGTTATAATCTTTCATATGCAATTAAC
AACATTTTAAAAACTACTTGTAAAATTAAGAAAACAGTTCAGCTACTGTC
ATTGGGTTGAATCCATCAGATATGGCTTCTTTCTCCCGTTGAAACTTATA
ATCCTGCAACCTTCTAAACTTGTTTGTAGAAAAGGACGTATGCCTGGTCA
TGCAATACCTTACTTGTCCCAATAGCAGTCACAGAGGCATCGTCAAAATG
GAGCCACTGGTCATTAAAATACCGAGCATCAGTAGTATAATGCCCCTTTG
AGGGATCTCTTCCATGGTGGGTAACAGTGGCAACAAGTTCATATTTTCGA
CCCTCAGCAGATGGAGTAACAAGCAGATCCCGACCCAAAACCAATTGAAG
AGGAAAACGGACAGATTTATGCAACTTTGTGCTCCCTTGGCTTCCATAAC
TAAAACGCATCAGGTGTAAAATCAAAATCTTTGAAAGCGTCTGTATCTTG
ACAGATTTTTTGGCAGTCACAACACCAGCATTTCCAGTAGATGATGTACG
GTATCCCTCAAGATTTTCTGGAGCAGAAAACAGACGAAGAGCATCCTCAA
TTGTATGCACAGCTTCAGAGTAAATATCAATGTGGAGCAAGAGAAATGGC
TGAACAGTTGCAGAAGCTTTATTTCCATGTGCCTTCACCACGCTTTTCAG
CTGTCCTCCAAATATATCACTAAGTGCTGAAGGCAGGAAGCTCTGTGTTC
TTGTCACTGCAGATTTGTTCTTTGGGCCAACTGTTTCCCATTCATCTTCT
TCTGCCAAAGAGACTAGAGCTGTATTGGCTCCG
back to top