CV884835

Overview
NameCV884835
Unique NameCV884835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10005 contig Csv1_Contig10005:22..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP12_BOVIN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 65/203 (32.02%), Postives = 92/203 (45.32%), Query Frame = -2 
Query:  223 PSALSDIFGGQLKSVVKAHGNKA-SATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 783
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY    +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  168 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 366
[Close]
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UB12B_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis GN=usp12-B PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 65/203 (32.02%), Postives = 92/203 (45.32%), Query Frame = -2 
Query:  223 PSALSDIFGGQLKSVVKAHGNKA-SATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 783
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY    +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 367
[Close]
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UB12A_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis GN=usp12-A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 65/203 (32.02%), Postives = 92/203 (45.32%), Query Frame = -2 
Query:  223 PSALSDIFGGQLKSVVKAHGNKA-SATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 783
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY    +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 367
The following BLAST results are available for this feature:
BLAST of CV884835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBP12_BOVIN9.473e-1132.02Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos ta... [more]
UB12B_XENLA9.473e-1132.02Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xeno... [more]
UB12A_XENLA9.473e-1132.02Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xeno... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884835 ID=CV884835; Name=CV884835; organism=Citrus sinensis; type=EST; length=883bp
AATGAAGCTTTCATTAATTTAACTTTATCAAGAACTTCCACTCATTTTCA
TTTTCATATCACATCAGTAAAATTGTTATAATCTTTCATATGCAATTAAC
AACATTTTAAAAACTACTTGTAAAATTAAGAAAACAGTTCAGCTACTGTC
ATTGGGTTGAATCCATCAGATATGGCTTCTTTCTCCCGTTGAAACTTATA
ATCCTGCAACCTTCTAAACTTGTTTGTAGAAAAGGACGTATGCCTGGTCA
TGCAATACCTTACTTGTCCCAATAGCAGTCACAGAGGCATCGTCAAAATG
GAGCCACTGGTCATTAAAATACCGAGCATCAGTAGTATAATGCCCCTTTG
AGGGATCTCTTCCATGGTGGGTAACAGTGGCAACAAGTTCATATTTTCGA
CCCTCAGCAGATGGAGTAACAAGCAGATCCCGACCCAAAACCAATTGAAG
AGGAAAACGGACAGATTTATGCAACTTTGTGCTCCCTTGGCTTCCATAAC
TAAAACGCATCAGGTGTAAAATCAAAATCTTTGAAAGCGTCTGTATCTTG
ACAGATTTTTTGGCAGTCACAACACCAGCATTTCCAGTAGATGATGTACG
GTATCCCTCAAGATTTTCTGGAGCAGAAAACAGACGAAGAGCATCCTCAA
TTGTATGCACAGCTTCAGAGTAAATATCAATGTGGAGCAAGAGAAATGGC
TGAACAGTTGCAGAAGCTTTATTTCCATGTGCCTTCACCACGCTTTTCAG
CTGTCCTCCAAATATATCACTAAGTGCTGAAGGCAGGAAGCTCTGTGTTC
TTGTCACTGCAGATTTGTTCTTTGGGCCAACTGTTTCCCATTCATCTTCT
TCTGCCAAAGAGACTAGAGCTGTATTGGCTCCG
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