CV884600

Overview
NameCV884600
Unique NameCV884600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884600_ssr72 microsatellite CV884600_ssr72:72..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_BOTFB (Structure-specific endonuclease subunit slx1 OS=Botryotinia fuckeliana (strain B05.10) GN=slx1 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFE-WAWQHPMESLAV----RRAAATFKSFSG--------VANKIKLAYTMLNLPNWERYAL 461
            F+ CYLL S         Y+G T NP RR+RQHNG ++ GAVRT +   RPWEM   + GFPT+++ALQF+ WAWQ+P  +L +    R + AT K  SG        + + +   + +L +P++ R+ L
Sbjct:   15 FYGCYLLRSTIRH--SALYVGSTPNPVRRLRQHNGLVKGGAVRTSRGNLRPWEMACIVTGFPTSIAALQFDRWAWQNPHITLHIPPSSRISHATQKKRSGHPKRPRHTLQSLLSNLHILLTVPSFSRWPL 142          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_MALGO (Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.816e-16
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  120 FACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVR----------RAAATFKSFSGVANKIKLAYTMLNLPN 443
            + CY L SL       TYIG T +P RR+RQHNG ++ GA  T+  RPW M + +YGFP+ ++ALQFEW+WQ P  S  +R          +++AT   ++G ++K     T  + P+
Sbjct:   15 YVCYCLRSLSR--PNQTYIGSTPDPIRRLRQHNGLVKQGAFYTRMARPWTMDVVVYGFPSKLAALQFEWSWQKPHASRHLRVMHDDGTRPNKSSATAAVYAGRSSKPLFPATRSSAPS 130          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_ASHGO (Structure-specific endonuclease subunit SLX1 OS=Ashbya gossypii GN=SLX1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKR--RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSG---VANKIKLAYTMLNLPNWERYALV 464
            F+ CYLL S+  R     YIG T NP RR+RQHNG + + GA RTK++  RPWE+   + GFP+ ++ALQFE AWQHP ++  ++      K   G   +  ++ +   +L+ P ++  +LV
Sbjct:   13 FYCCYLLRSIPKRLS--YYIGSTPNPVRRLRQHNGLLTKGGAYRTKRQGTRPWELAASVSGFPSKIAALQFEHAWQHPYQTRFIKSEDRIVKKKGGGRSIHQRLAVLKLLLHHPFFKVMSLV 132          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_ASPFU (Structure-specific endonuclease subunit slx1 OS=Aspergillus fumigatus GN=slx1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRT--KKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVR 362
            F+ CYLL S         YIG T NP RR+ QHNG ++ GA RT  +K RPWEMVL + GF + ++ALQFEWAWQ+P  S  +R
Sbjct:   15 FYCCYLLRSTVRH--ASLYIGSTPNPARRLIQHNGVVKGGARRTAAEKLRPWEMVLVVEGFMSRLAALQFEWAWQNPWYSRHLR 96          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_ASPFC (Structure-specific endonuclease subunit slx1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=slx1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRT--KKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVR 362
            F+ CYLL S         YIG T NP RR+ QHNG ++ GA RT  +K RPWEMVL + GF + ++ALQFEWAWQ+P  S  +R
Sbjct:   15 FYCCYLLRSTVRH--ASLYIGSTPNPARRLIQHNGVVKGGARRTAAEKLRPWEMVLVVEGFMSRLAALQFEWAWQNPWYSRHLR 96          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_YEAST (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae GN=SLX1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSG---VANKIKLAYTMLNLPNWERYALVNLVLFN--QWSV 494
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  +       K  +G   + +K+ L   +L    ++R  L+ + +FN   W V
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLI-VEVFNIKAWEV 143          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_YEAS7 (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae (strain YJM789) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSG---VANKIKLAYTMLNLPNWERYALVNLVLFN--QWSV 494
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  +       K  +G   + +K+ L   +L    ++R  L+ + +FN   W V
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLI-VEVFNIKAWEV 143          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_YEAS6 (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 51/133 (38.35%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSG---VANKIKLAYTMLNLPNWERYAL-VNLVLFNQWSV 494
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  +       K  +G   + +K+ L   +L    ++R  L V++     W V
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLIVDVFNIKAWEV 143          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_YEAS1 (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 51/133 (38.35%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSG---VANKIKLAYTMLNLPNWERYAL-VNLVLFNQWSV 494
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  +       K  +G   + +K+ L   +L    ++R  L V++     W V
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLIVDVFNIKAWEV 143          
BLAST of CV884600 vs. ExPASy Swiss-Prot
Match: SLX1_VANPO (Structure-specific endonuclease subunit SLX1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  117 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKR--RPWEMVLCIYGFPTNVSALQFEWAWQH 338
            F+ CYLL S+    K   YIG T NP RR+RQHNG +   GA RTK+   RPWEMVL +YGF + ++ALQFE AWQH
Sbjct:   21 FYCCYLLQSI--NKKQSFYIGSTPNPVRRLRQHNGNLSNGGAYRTKREGTRPWEMVLVVYGFTSKIAALQFEHAWQH 95          
The following BLAST results are available for this feature:
BLAST of CV884600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SLX1_BOTFB1.390e-1640.00Structure-specific endonuclease subunit slx1 OS=Bo... [more]
SLX1_MALGO1.816e-1638.98Structure-specific endonuclease subunit SLX1 OS=Ma... [more]
SLX1_ASHGO4.045e-1639.34Structure-specific endonuclease subunit SLX1 OS=As... [more]
SLX1_ASPFU5.283e-1652.38Structure-specific endonuclease subunit slx1 OS=As... [more]
SLX1_ASPFC5.283e-1652.38Structure-specific endonuclease subunit slx1 OS=As... [more]
SLX1_YEAST6.899e-1638.81Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_YEAS76.899e-1638.81Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_YEAS66.899e-1638.35Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_YEAS16.899e-1638.35Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_VANPO6.899e-1657.14Structure-specific endonuclease subunit SLX1 OS=Va... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008D12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884600 ID=CV884600; Name=CV884600; organism=Citrus sinensis; type=EST; length=843bp
GCAAAGCAGTTCATGACTCAGAAACCCTAATTTCAAAGTCAAAAACTCTA
GATCCAGTAAAAGATGATTTTGAAGAAGAAGAAGAAGAACAGAAAGCCAA
AGATCAACGGAAAGGGTTCTTCGCTTGTTATCTTTTAACCTCCTTATGCC
CCCGTTTCAAAGGCCACACCTATATCGGATTCACTGTGAACCCGCGTCGT
AGAATTAGGCAGCATAATGGTGAAATAAGGTGTGGGGCAGTGAGGACGAA
GAAAAGGCGCCCTTGGGAAATGGTTTTATGCATTTATGGTTTCCCAACAA
ATGTTTCAGCTCTTCAGTTTGAGTGGGCTTGGCAGCATCCAATGGAATCA
CTGGCTGTAAGGCGGGCAGCTGCTACATTTAAATCCTTCTCTGGAGTTGC
CAATAAAATCAAACTCGCATACACGATGCTCAACCTCCCTAACTGGGAGA
GGTACGCTTTGGTTAACTTGGTTTTATTTAACCAATGGTCGGTCCGTCAA
ATATGTAATGTGCGTCTTCTGTCATCAGCTTGAACATCACGGTGAACTAT
TTTTCAACAAAATACTCGAAACATTCTTCTAGTTGCCCAAACCTGCCAGA
GCACATGAAGGTCCAAGTACGTTCCATGGATGAACTTCCCTGCTATACTG
AAAGAGATGAGCGTTTGTTAGGGGATGAAGACAGCCTGGGTGATGAGGAG
TACGATGAAGCTAGTGAAAACAGTGGAAGTTTAGAGGAAACACGCGGAGA
TGTGACAATTAATTTTTCATCAGATTATTCTTTTAGCATTTATGAGGATG
CCTATGAGCAATGTGGTCAATTTAAACAATATGGAAATGAGCA
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