EY664923

Overview
NameEY664923
Unique NameEY664923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 1.112e-110
Identity = 194/230 (84.35%), Postives = 204/230 (88.70%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T V+VLLDNEAI+DICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK T+QFVDWCPTGFKCGINYQPP+VVPGGDLA V RAVCMISN+T+V EVFSRIDH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.452e-110
Identity = 194/230 (84.35%), Postives = 203/230 (88.26%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T VS+LLDNEAI+DICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK T+QFVDWCPTGFKCGINYQPP VVPGGDLA V RAVCMISN+T+V EVFSRIDH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVSILLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.452e-110
Identity = 193/230 (83.91%), Postives = 205/230 (89.13%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T VS+LLDNEAI+DICRRSL+IERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTK T+QFVDWCPTGFKCGINYQPPTVVPGGDLA V RAVCMISN+T+VAEVFSRIDH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.452e-110
Identity = 193/230 (83.91%), Postives = 204/230 (88.70%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T V++LLDNEAI+DICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK T+QFVDWCPTGFKCGINYQPP+VVPGGDLA V RAVCMISN+T+V EVFSRIDH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVAILLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.452e-110
Identity = 194/230 (84.35%), Postives = 203/230 (88.26%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T VS+LLDNEAI+DICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK T+QFVDWCPTGFKCGINYQPP VVPGGDLA V RAVCMISN+T+V EVFSRIDH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVSILLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.452e-110
Identity = 193/230 (83.91%), Postives = 204/230 (88.70%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T V++LLDNEAI+DICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK T+QFVDWCPTGFKCGINYQPP+VVPGGDLA V RAVCMISN+T+V EVFSRIDH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVAILLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.452e-110
Identity = 191/230 (83.04%), Postives = 204/230 (88.70%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T V+V+LDNEAI+DICRRSLDIERPTYTNLNR             RFDGA+NVDITEFQTNLVPYPRIHFMLSSYAP+ISAEKAYHEQLSV EITNA FEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNA+VATIKTK T+QFVDWCPTGFKCGINYQPPTVVPGGDLA V RAVCMISN+TA+ E+FSR+DH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVAVMLDNEAIYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.897e-110
Identity = 193/230 (83.91%), Postives = 204/230 (88.70%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T VS+LLDNEAI+DICRRSL IERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTK T+QFVDWCPTGFKCGINYQPPTVVPGGDLA V RAVCMISN+T+VAEVFSRIDH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 2.477e-110
Identity = 191/230 (83.04%), Postives = 206/230 (89.57%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T V+V+LDNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVDITEFQTNLVPYPRIHF+LSSYAP+ISAEKAYHEQLSV EITNA FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNA+VATIKTK T+QFVDWCPTGFKCGINYQPPTVVPGGDLA V RAVCMISN+TA+AEVF+RIDH FDLMY+K AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFVLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 9.412e-110
Identity = 192/230 (83.48%), Postives = 204/230 (88.70%), Query Frame = 2 
Query:    2 TYVSVLLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            T V+V+LDNEAI+DICRRSLDI+RPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHFML SYAPVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK T+QFVDW PTGFKCGINYQPPTVVPGGDLA V RAVCMISN+TA+AEVFSRIDH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  198 TDVAVMLDNEAIYDICRRSLDIQRPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
The following BLAST results are available for this feature:
BLAST of EY664923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA1_ELEIN1.112e-11084.35Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA_WHEAT1.452e-11084.35Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]
TBA6_ARATH1.452e-11083.91Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_MAIZE1.452e-11083.91Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA2_HORVU1.452e-11084.35Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]
TBA1_MAIZE1.452e-11083.91Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA1_CHLRE1.452e-11083.04Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA2_ARATH1.897e-11083.91Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA_EUGGR2.477e-11083.04Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA1_NAEGR9.412e-11083.48Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664923 ID=EY664923; Name=EY664923; organism=Citrus sinensis; type=EST; length=919bp
CACATATGTTTCTGTGCTATTGGACAATGAAGCTATTCATGACATCTGCA
GGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGAATCGATTG
ATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTTGATGGAGC
TATTAATGTTGATATTACAGAGTTCCAGACCAACCTTGTACCGTATCCTC
GTATCCATTTCATGCTTTCATCATATGCCCCTGTCATCTCTGCTGAAAAA
GCATACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGA
GCCCTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGG
CTTGCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCC
GCTGTTGCCACTATCAAAACTAAGATGACCGTGCAATTTGTTGACTGGTG
CCCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTAC
CTGGAGGTGACCTGGCCAATGTTCATCGAGCTGTTTGCATGATCAGCAAC
AACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACATATTCGATCT
CATGTATGCCAAGATGGCATTCGTCCACTGGTACGTTGGTGAATGCATGG
ANGAATGTGAATTCTCAGAATCACGTGAAGATCTGGCTGCTCTTGAGAAA
GATATGANGAAAGTTGTGCANAAGGAGTTGATGATGAAGATGATGGNGAA
AAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAGAAATTTGT
ACATTTTGCATGGGCATTATGTNGAAATTNGTGAGAATTGTGAGGTTCTG
TACTCATGCCTAGTCCCTGGCCCTTTATGGGCTTGTTCTTTCGGTAGACT
ATTTCCTTTGCTGTGGACC
back to top