EY664923 | Citrus Genome Database

Overview


Name	EY664923
Unique Name	EY664923
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	919

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1A_MOUSE (Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.933e-103
Identity = 176/225 (78.22%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.933e-103
Identity = 176/225 (78.22%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.933e-103
Identity = 176/225 (78.22%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 3.830e-103
Identity = 176/225 (78.22%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQL+V EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 6.533e-103
Identity = 176/225 (78.22%), Postives = 195/225 (86.67%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 6.533e-103
Identity = 175/225 (77.78%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQL+V EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 6.533e-103
Identity = 175/225 (77.78%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQL+V EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 6.533e-103
Identity = 175/225 (77.78%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQL+V EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 8.533e-103
Identity = 175/225 (77.78%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK ++QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

[Close]

BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 8.533e-103
Identity = 175/225 (77.78%), Postives = 196/225 (87.11%), Query Frame = 2

Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK ++QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

The following BLAST results are available for this feature:

BLAST of EY664923 vs. ExPASy Swiss-Prot

BLAST of EY664923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414


Match Name	E-value	Identity	Description
TBA1A_MOUSE	2.933e-103	78.22	Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a P...	[more]
TBA1A_HUMAN	2.933e-103	78.22	Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P...	[more]
TBA1A_CRIGR	2.933e-103	78.22	Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU...	[more]
TBA1_PARLI	3.830e-103	78.22	Tubulin alpha-1 chain OS=Paracentrotus lividus PE=...	[more]
TBA1_DROME	6.533e-103	78.22	Tubulin alpha-1 chain OS=Drosophila melanogaster G...	[more]
TBA1C_RAT	6.533e-103	77.78	Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tub...	[more]
TBA1C_MOUSE	6.533e-103	77.78	Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c P...	[more]
TBA1C_CRIGR	6.533e-103	77.78	Tubulin alpha-1C chain OS=Cricetulus griseus GN=TU...	[more]
TBA_TORMA	8.533e-103	77.78	Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1	[more]
TBA1B_RAT	8.533e-103	77.78	Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-072-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY664923 ID=EY664923; Name=EY664923; organism=Citrus sinensis; type=EST; length=919bp
CACATATGTTTCTGTGCTATTGGACAATGAAGCTATTCATGACATCTGCA
GGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGAATCGATTG
ATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTTGATGGAGC
TATTAATGTTGATATTACAGAGTTCCAGACCAACCTTGTACCGTATCCTC
GTATCCATTTCATGCTTTCATCATATGCCCCTGTCATCTCTGCTGAAAAA
GCATACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGA
GCCCTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGG
CTTGCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCC
GCTGTTGCCACTATCAAAACTAAGATGACCGTGCAATTTGTTGACTGGTG
CCCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTAC
CTGGAGGTGACCTGGCCAATGTTCATCGAGCTGTTTGCATGATCAGCAAC
AACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACATATTCGATCT
CATGTATGCCAAGATGGCATTCGTCCACTGGTACGTTGGTGAATGCATGG
ANGAATGTGAATTCTCAGAATCACGTGAAGATCTGGCTGCTCTTGAGAAA
GATATGANGAAAGTTGTGCANAAGGAGTTGATGATGAAGATGATGGNGAA
AAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAGAAATTTGT
ACATTTTGCATGGGCATTATGTNGAAATTNGTGAGAATTGTGAGGTTCTG
TACTCATGCCTAGTCCCTGGCCCTTTATGGGCTTGTTCTTTCGGTAGACT
ATTTCCTTTGCTGTGGACC