EY664923

Overview
NameEY664923
Unique NameEY664923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.755e-102
Identity = 174/225 (77.33%), Postives = 194/225 (86.22%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTK T+QFVDWCPTGFK GINYQPPT VPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427

HSP 2 Score: 21.1718 bits (43), Expect = 1.755e-102
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 1 
Query:  703 YXESCAXGVDDEDDGEKY 756
            Y E      +DED+GE+Y
Sbjct:  432 YEEVGIDSYEDEDEGEEY 449
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.758e-102
Identity = 174/225 (77.33%), Postives = 194/225 (86.22%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L +Y+P+ISAEKAYHEQLSV EITNA FEPS+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+A IKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:   78 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 302

HSP 2 Score: 21.1718 bits (43), Expect = 1.758e-102
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 1 
Query:  703 YXESCAXGVDDEDDGEKY 756
            Y E     +D ED+GE+Y
Sbjct:  307 YEEVGTDSMDGEDEGEEY 324
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.901e-102
Identity = 174/225 (77.33%), Postives = 196/225 (87.11%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERP+YTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ + KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  203 MVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 2.483e-102
Identity = 175/225 (77.78%), Postives = 194/225 (86.22%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISAEKAYHE LSV EITNA FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+REDLAA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 2.483e-102
Identity = 174/225 (77.33%), Postives = 195/225 (86.67%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTK T+QFVDWCPTGFK GINY+PPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.243e-102
Identity = 174/225 (77.33%), Postives = 195/225 (86.67%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTK ++QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.243e-102
Identity = 174/225 (77.33%), Postives = 195/225 (86.67%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTK ++QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.243e-102
Identity = 174/225 (77.33%), Postives = 195/225 (86.67%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTK ++QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.243e-102
Identity = 174/225 (77.33%), Postives = 195/225 (86.67%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTK ++QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427
[Close]
BLAST of EY664923 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 371.703 bits (953), Expect = 3.243e-102
Identity = 174/225 (77.33%), Postives = 195/225 (86.67%), Query Frame = 2 
Query:   17 LLDNEAIHDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKMTVQFVDWCPTGFKCGINYQPPTVVPGGDLANVHRAVCMISNNTAVAEVFSRIDHIFDLMYAKMAFVHWYVGECMXECEFSESREDLAA 691
            ++DNEAI+DICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTK ++QFVDWCPTGFK GINYQPPTVVPGGDLA V RAVCM+SN TA+AE ++R+DH FDLMYAK AFVHWYVGE M E EFSE+RED+AA
Sbjct:  203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427
The following BLAST results are available for this feature:
BLAST of EY664923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA_XENTR1.755e-10277.33Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA8_CHICK1.758e-10277.33Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA1_APLCA1.901e-10277.33Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]
TBAT_ONCMY2.483e-10277.78Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA1A_PIG2.483e-10277.33Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA4A_RAT3.243e-10277.33Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE3.243e-10277.33Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA3.243e-10277.33Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN3.243e-10277.33Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN3.243e-10277.33Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664923 ID=EY664923; Name=EY664923; organism=Citrus sinensis; type=EST; length=919bp
CACATATGTTTCTGTGCTATTGGACAATGAAGCTATTCATGACATCTGCA
GGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGAATCGATTG
ATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTTGATGGAGC
TATTAATGTTGATATTACAGAGTTCCAGACCAACCTTGTACCGTATCCTC
GTATCCATTTCATGCTTTCATCATATGCCCCTGTCATCTCTGCTGAAAAA
GCATACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGA
GCCCTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGG
CTTGCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCC
GCTGTTGCCACTATCAAAACTAAGATGACCGTGCAATTTGTTGACTGGTG
CCCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTAC
CTGGAGGTGACCTGGCCAATGTTCATCGAGCTGTTTGCATGATCAGCAAC
AACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACATATTCGATCT
CATGTATGCCAAGATGGCATTCGTCCACTGGTACGTTGGTGAATGCATGG
ANGAATGTGAATTCTCAGAATCACGTGAAGATCTGGCTGCTCTTGAGAAA
GATATGANGAAAGTTGTGCANAAGGAGTTGATGATGAAGATGATGGNGAA
AAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAGAAATTTGT
ACATTTTGCATGGGCATTATGTNGAAATTNGTGAGAATTGTGAGGTTCTG
TACTCATGCCTAGTCCCTGGCCCTTTATGGGCTTGTTCTTTCGGTAGACT
ATTTCCTTTGCTGTGGACC
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