EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L+ ELLR I   GFE PS +Q   I   + G DVI QA+SG GKTA F ++ LQQ + +  +  AL+L  TRELA QI
Sbjct:   32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQI 114          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            +  F    LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +       AL++  TRELA QI
Sbjct:   24 TDSFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI
Sbjct:   25 FDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 42/83 (50.60%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK ELLR I   GFE PS +Q   I   + G D I QA+SG GKTA F +S LQ+ +    +  ALVL  TRELA QI
Sbjct:   30 FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQI 112          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 44/83 (53.01%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI
Sbjct:   26 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 108          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 44/83 (53.01%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 116          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 44/83 (53.01%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 116          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 44/83 (53.01%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 116          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 44/83 (53.01%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 116          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 44/83 (53.01%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 116          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
IF4A_DROME1.618e-1349.40Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_ASPNC1.618e-1347.67ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_DEBHA2.113e-1346.99ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_CRYNE2.113e-1350.60ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A1_RABIT2.113e-1353.01Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR2.113e-1353.01Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE2.113e-1353.01Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA2.113e-1353.01Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN2.113e-1353.01Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN2.113e-1353.01Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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