EG358373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2) HSP 1 Score: 210.69 bits (535), Expect = 1.889e-54 Identity = 104/116 (89.66%), Postives = 108/116 (93.10%), Query Frame = 3 Query: 39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 + PDS K NGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ EP+PGQV+ALVLCHTRELAYQIC+EF RF Sbjct: 23 KVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRF 137
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2) HSP 1 Score: 210.69 bits (535), Expect = 1.889e-54 Identity = 104/116 (89.66%), Postives = 108/116 (93.10%), Query Frame = 3 Query: 39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 + PDS K NGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ EP+PGQV+ALVLCHTRELAYQIC+EF RF Sbjct: 23 KVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRF 137
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 6.290e-50 Identity = 95/112 (84.82%), Postives = 100/112 (89.29%), Query Frame = 3 Query: 51 SVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 + A A+ + KKGYVGIHSSGFRDFLLKPELLRAI D GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLS+LQQ +P GQV ALVLCHTRELAYQICHEFERF Sbjct: 31 AAAANASADVVKKGYVGIHSSGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERF 142
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 8.215e-50 Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = 3 Query: 57 ATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 A A+ + KKGYVGIHSSGFRDFLLKPELLRAI D GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLS+LQQ +P GQV ALVLCHTRELAYQICHEFERF Sbjct: 33 AANASADVVKKGYVGIHSSGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERF 142
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_PONAB (Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=BAT1 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 4.665e-45 Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 3 Query: 48 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 D V T A G+ A K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_PIG (Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT1 PE=3 SV=2) HSP 1 Score: 179.489 bits (454), Expect = 4.665e-45 Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 3 Query: 48 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 D V T A G+ A K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_PANTR (Spliceosome RNA helicase BAT1 OS=Pan troglodytes GN=BAT1 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 4.665e-45 Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 3 Query: 48 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 D V T A G+ A K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_MACMU (Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN=BAT1 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 4.665e-45 Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 3 Query: 48 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 D V T A G+ A K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_HUMAN (Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=BAT1 PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 4.665e-45 Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 3 Query: 48 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 D V T A G+ A K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_BOVIN (Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT1 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 4.665e-45 Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 3 Query: 48 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 D V T A G+ A K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136 The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 237
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Sequences
The
following sequences are available for this feature:
EST sequence >EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bpback to top |