EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   48 DSVATKANGEAAKKGYVGIHSSG----FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            D  +  A+ E  +K    I   G    F D  + P+++ A  + GF+HP+ +Q + IP+A+   DVI  A++G GKTA F +  LQ    NP    A VL  TRELAYQI  + E
Sbjct:   79 DKDSPAADEEQDEKKVATIADDGKKVEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVE 193          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI
Sbjct:   25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI
Sbjct:   25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 40/78 (51.28%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI
Sbjct:   32 LRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 40/78 (51.28%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI
Sbjct:   32 LRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F D  L   +L+A+ D GFE PS +Q  CIP  + G DV+  A++G GKTA F L  L Q +P+      LV+  TRELA Q+    E F
Sbjct:    7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELF 96          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      F
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDF 97          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      F
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDF 97          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      F
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDF 97          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      F
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDF 97          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
RRP3_USTMA2.760e-1338.26ATP-dependent rRNA helicase RRP3 OS=Ustilago maydi... [more]
IF4A_PICST2.760e-1346.99ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_LODEL2.760e-1346.99ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_COCIM2.760e-1351.28ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
IF4A_AJECN2.760e-1351.28ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
DEAD_HAEIN2.760e-1343.33Cold-shock DEAD box protein A homolog OS=Haemophil... [more]
DEAD_SHIFL3.605e-1344.44Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_ECOLI3.605e-1344.44Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL63.605e-1344.44Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO573.605e-1344.44Cold-shock DEAD box protein A OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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