EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI
Sbjct:   24 FDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQI 106          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 43/81 (53.09%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  123 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI
Sbjct:   36 DMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 116          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            S  F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + ALVL  TRELA QI
Sbjct:   22 SPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 41/83 (49.40%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F    LKPELL+ I + GFE PS +Q   I Q I G D I QA+SG GKTA F +  L   +       ALVL  TRELA QI
Sbjct:   26 FESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQI 108          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 3
Query:   96 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            V +H + F    LKPELL+ I   GFE PS +Q   I Q I G D I QA+SG GKTA F +  L+  +    +  ALVL  TRELA QI
Sbjct:   22 VKVHRT-FESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQI 110          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  L   +P       LVL  TRELA Q+      F
Sbjct:    8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEF 97          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+   N     AL+L  TRELA QI
Sbjct:   25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            S+ F    LK  LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + ALVL  TRELA QI
Sbjct:   22 SATFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DBP9_NEUCR (ATP-dependent RNA helicase dbp-9 OS=Neurospora crassa GN=dbp-9 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL------QQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F D  L P L++A+    FE P+ VQ + IP A+ G DV+C+AK+G GKTA +VL  L      + T+P P   +AL+L  TRELA Q+    + F
Sbjct:   97 FSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVLSGILKRKATDPTP-FTSALILVPTRELADQVHKAIDAF 191          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.031e-13
Identity = 42/86 (48.84%), Postives = 49/86 (56.98%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            S  F    L+  LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  + +   + ALVL  TRELA QI
Sbjct:   22 SPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQI 107          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
IF4A_PICGU4.708e-1346.99ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A1_PONAB4.708e-1353.09Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
FAL1_VANPO4.708e-1350.00ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
FAL1_PICGU4.708e-1349.40ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
FAL1_LODEL4.708e-1347.78ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
DEAD_KLEPN4.708e-1343.33Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]
IF4A_CANAL6.149e-1346.99ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
FAL1_CANGA6.149e-1350.00ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
DBP9_NEUCR6.149e-1342.71ATP-dependent RNA helicase dbp-9 OS=Neurospora cra... [more]
FAL1_ASHGO8.031e-1348.84ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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