EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 122          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI
Sbjct:   46 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 123          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 122          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_SCLS1 (ATP-dependent RNA helicase fal1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=fal1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 42/83 (50.60%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F+D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            S F +  LK +LLR I   G+E PS VQ   I Q   G DVI QA+SG GKTA F +  LQ  + +     AL+L  TRELA QI
Sbjct:   21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   GFE PS +Q   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_BOTFB (ATP-dependent RNA helicase fal1 OS=Botryotinia fuckeliana (strain B05.10) GN=fal1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 42/83 (50.60%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F+D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   45 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+
Sbjct:   79 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQV 179          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   45 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+
Sbjct:   79 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQV 179          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: MAK5_SCHPO (ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe GN=mak5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 3
Query:   99 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRELAYQICHEFE 380
            G+  S +  F L PE+L ++  +GF  P  +Q   IP+A +G D+I +A +G GKT  F +  L+    N     V ALV+  TRELA+QIC  FE
Sbjct:  118 GVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFE 213          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
IF4A3_HUMAN2.337e-1250.00Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
IF4A3_CHICK2.337e-1250.00Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_BOVIN2.337e-1250.00Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
FAL1_SCLS12.337e-1250.60ATP-dependent RNA helicase fal1 OS=Sclerotinia scl... [more]
FAL1_SCHPO2.337e-1248.24ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
FAL1_COCIM2.337e-1250.60ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
FAL1_BOTFB2.337e-1250.60ATP-dependent RNA helicase fal1 OS=Botryotinia fuc... [more]
DDX6_XENTR2.337e-1234.58Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DDX6_XENLA2.337e-1234.58ATP-dependent RNA helicase ddx6 OS=Xenopus laevis ... [more]
MAK5_SCHPO3.052e-1240.63ATP-dependent RNA helicase mak5 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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