EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQI 122          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_ASPCL (ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus GN=fal1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            +  F+D  +   L  A    G++ P+++Q E IP A+ G D+I  A++G GKTA F L  LQ     P  +  LVL  TRELAYQI  +FE
Sbjct:   47 TKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLAPTRELAYQISQQFE 137          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            + F D  +K ++LR + + GFE PS +Q   +   + G DVI QA+SG GKT++  LS  Q  + +  +V AL+L  TRELA Q
Sbjct:   35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQ 118          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI
Sbjct:   49 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQI 126          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI
Sbjct:   40 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQI 117          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI
Sbjct:   40 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQI 117          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI
Sbjct:   49 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQI 126          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 40/83 (48.19%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F    LK +LLR I   GFE PS +Q   I Q I G D I QA+SG GKTA F +S L+  +    +  A+VL  TRELA QI
Sbjct:   26 FESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQI 108          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
IF4A3_MOUSE3.052e-1250.00Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
FAL1_EMENI3.052e-1250.60ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
FAL1_ASPCL3.052e-1250.60ATP-dependent RNA helicase fal1 OS=Aspergillus cla... [more]
RRP3_COCIM3.986e-1241.76ATP-dependent rRNA helicase RRP3 OS=Coccidioides i... [more]
RH2_ARATH3.986e-1241.67DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A3_XENTR3.986e-1250.00Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_SALSA3.986e-1250.00Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A3_DANRE3.986e-1250.00Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
I4A3A_XENLA3.986e-1250.00Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
FAL1_YARLI3.986e-1248.19ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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