EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 377
            F    + P+++ A    GF  P E+Q E IP A+ G D+I  A++G GKTA FV+  LQ+    P  +  L L  TRELAYQI  +F
Sbjct:  121 FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQF 207          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DBP9_SCHPO (ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces pombe GN=dbp9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTEPNPGQVTALVLCHTRELAYQICHEFER 383
            F DF L P L RAI    FE P+ VQ E IP A+ G D++ QA++G GKTA +++  L+      Q + N   + AL+L  TRELA Q+ +  E+
Sbjct:   16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEK 110          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.205e-12
Identity = 40/83 (48.19%), Postives = 46/83 (55.42%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F    L+ ELLR I + GFE PS +Q   I   I G D I QA+SG GKTA F +  LQ  E N      L+L  TRELA QI
Sbjct:   34 FESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQI 116          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.205e-12
Identity = 47/113 (41.59%), Postives = 59/113 (52.21%), Query Frame = 3
Query:   45 PDSVATKANGEAAKKGYVGIHSS------GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            P    TK N    ++G    +++       F    L+P+LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ + +  Q  ALVL  TRELA QI
Sbjct:   13 PRQFDTKMNAILGEEGEETFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQI 125          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.205e-12
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 3
Query:   96 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            V +H + F    LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   23 VTVHPT-FESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQI 111          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.205e-12
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_SCHPO (ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe GN=rrp3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            F++  +  EL  A    GF+ P+ +Q E IP  +   DVI  A++G GKTA F L  +Q+   NP    A+VL  TRELAYQI  +FE
Sbjct:   48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFE 135          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            FR+  +   L  A  + G+  P+ +Q  CIP A+ G D+I  A++G GKTA FVL  LQ     P Q  +L+L  TRELA QI H  E
Sbjct:   30 FRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPTRELAQQIAHTVE 117          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
FAL1_NEOFI3.986e-1250.60ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_ASPTN3.986e-1250.60ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
DDX47_DICDI3.986e-1242.53Probable ATP-dependent RNA helicase ddx47 OS=Dicty... [more]
DBP9_SCHPO3.986e-1242.11ATP-dependent RNA helicase dbp9 OS=Schizosaccharom... [more]
IF4A_DICDI5.205e-1248.19Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
IF4A3_ARATH5.205e-1241.59Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
FAL1_MAGGR5.205e-1247.78ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
FAL1_AJECN5.205e-1250.60ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
RRP3_SCHPO6.799e-1243.18ATP-dependent rRNA helicase rrp3 OS=Schizosaccharo... [more]
RRP3_ASPTN6.799e-1243.18ATP-dependent rRNA helicase rrp3 OS=Aspergillus te... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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