EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q + I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  T+ELA QI
Sbjct:   48 LREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQI 125          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_GIBZE (ATP-dependent RNA helicase FAL1 OS=Gibberella zeae GN=FAL1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 3
Query:   96 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            V +H + F    LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   23 VTVHPT-FESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQI 111          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_ASPOR (ATP-dependent RNA helicase fal1 OS=Aspergillus oryzae GN=fal1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   26 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQI 108          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQI 109          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   66 ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICH 371
            A G+  K      HSS F+   L   +L+ + + GFE P+++Q + IP A+LG D++  A +G GKTA F++  L++    P +V     L+LC TRELA Q CH
Sbjct:  245 AEGDKEKSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQ-CH 347          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F D  + P +LRAI D G+E P+ +Q   IP  + G DV+  A++G GKTA F +  L + +       ALVL  TRELA Q+   F R+
Sbjct:   15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRY 104          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.879e-12
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   48 DSVATK--ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            +SV+++  A  E    G     +  F++  +  +L  A  + G++ P+ +Q + IP A+ G DVI  A++G GKTA F L  LQ     P  +  LVL  TRELAYQI   FE
Sbjct:   23 ESVSSRGSAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQAFE 135          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_MACFA (Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.879e-12
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L   RELA QI
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPARELAVQI 122          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.879e-12
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            LK +LLR I    FE PS +Q   I   I G DVI QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   31 LKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQI 108          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.879e-12
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 3
Query:   96 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            V +H + F    LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   22 VTVHPT-FESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQI 110          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
I4A3B_XENLA6.799e-1248.72Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
FAL1_GIBZE6.799e-1247.78ATP-dependent RNA helicase FAL1 OS=Gibberella zeae... [more]
FAL1_ASPOR6.799e-1250.60ATP-dependent RNA helicase fal1 OS=Aspergillus ory... [more]
FAL1_ASPNC6.799e-1250.60ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
DRS1_SCHPO6.799e-1239.05ATP-dependent RNA helicase drs1 OS=Schizosaccharom... [more]
DEAD_MYCTU6.799e-1241.11Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
RRP3_EMENI8.879e-1237.17ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
IF4A3_MACFA8.879e-1248.72Eukaryotic initiation factor 4A-III OS=Macaca fasc... [more]
FAL1_USTMA8.879e-1251.28ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
FAL1_NEUCR8.879e-1247.78ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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