EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.879e-12
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 3
Query:   96 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            V +H + F    LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI
Sbjct:   23 VTVHPT-FESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQI 111          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SRMB_HAEIN (ATP-dependent RNA helicase srmB homolog OS=Haemophilus influenzae GN=srmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ----TEPNPGQVTALVLCHTRELAYQICHEFE 380
            S F  F L PELL+A+   G+  P+ +Q E IP A+   DV+  A +G GKTA F+L  LQ         PG    LVL  TRELA Q+  + E
Sbjct:    4 SQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAE 97          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            +  F+D  +   L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P  +  LVL  TRELAYQI   FE
Sbjct:   55 TKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQPLFGLVLAPTRELAYQISQSFE 145          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 39/88 (44.32%), Postives = 48/88 (54.55%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            F +  L PELL AI    F  P+ +Q E IP A+ G D+I  A++G GKTA F +  LQ           LVL  TRELAYQI   F+
Sbjct:   67 FNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQIKETFD 154          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            F+D  +   L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P  +  LVL  TRELAYQI  +FE
Sbjct:   62 FKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFE 149          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 3
Query:   96 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            + +H++ F    LK +LL+ I   GFE PS +Q   I Q I G D I QA+SG GKTA F +  L+  +       AL+L  TRELA QI
Sbjct:   22 IKVHAT-FESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQI 110          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_ASPFU (ATP-dependent RNA helicase fal1 OS=Aspergillus fumigatus GN=fal1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 41/83 (49.40%), Postives = 46/83 (55.42%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +  LQ  +    +  ALVL  TRELA QI
Sbjct:   26 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQVIDTVVRETQALVLSPTRELATQI 108          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F +  L  +LL  I  +GF   S +Q + IP A+ G DVI QA++G GKTA F L TL++       + ALV+  TRELA Q   E  RF
Sbjct:    3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRF 92          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            F +  L  +LL  I  +GF   S +Q + IP A+ G DVI QA++G GKTA F L TL++       + ALV+  TRELA Q   E  RF
Sbjct:    3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRF 92          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            F++  L  +L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P     LVL  TRELAYQI   FE
Sbjct:   54 FKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQAFE 141          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
FAL1_CHAGB8.879e-1247.78ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
SRMB_HAEIN1.160e-1142.55ATP-dependent RNA helicase srmB homolog OS=Haemoph... [more]
RRP3_SCLS11.160e-1141.76ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sc... [more]
RRP3_DEBHA1.160e-1144.32ATP-dependent rRNA helicase RRP3 OS=Debaryomyces h... [more]
RRP3_BOTFB1.160e-1143.18ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
FAL1_DEBHA1.160e-1143.33ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
FAL1_ASPFU1.160e-1149.40ATP-dependent RNA helicase fal1 OS=Aspergillus fum... [more]
EXP9_STRR61.160e-1143.33Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
EXP9_STRPN1.160e-1143.33Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
RRP3_ASPOR1.515e-1143.18ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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