EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.396e-41
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 3
Query:   48 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            ++   K      K  YVGIHS+GFRDFLLKPELLRAIVD GFEHPSEVQ  CIPQ+ILG DV+CQAK+G+GKTAVFVLSTLQQ EP PG+ + +VLCHTRELAYQI +E+ RF
Sbjct:   36 ETTTVKEENTEQKGSYVGIHSTGFRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARF 148          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_DEBHA (ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii GN=SUB2 PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.129e-41
Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = 3
Query:   42 APDSVATKA--NGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            AP + A +   + EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P PG+++ LV+CHTRELAYQI +E+ RF
Sbjct:   25 APSAAAGEGANDKEADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARF 142          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.086e-41
Identity = 81/105 (77.14%), Postives = 93/105 (88.57%), Query Frame = 3
Query:   75 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P PG+++ LV+CHTRELAYQI +E+ RF
Sbjct:   36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARF 140          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.337e-41
Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 3
Query:   72 GEAAK-KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            G+A K KG Y  IHSSGFRDFLLKPE+LRAI D GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFV++TLQQ EP  G+V+ + +CHTRELA+QI  E+ERF
Sbjct:   26 GDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERF 132          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.970e-41
Identity = 83/111 (74.77%), Postives = 92/111 (82.88%), Query Frame = 3
Query:   69 NGEAAKKG----YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVT-ALVLCHTRELAYQICHEFERF 386
            N EA KK     YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ EP+       LV+CHTRELA+QI  E+ERF
Sbjct:   23 NQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERF 133          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.649e-40
Identity = 84/131 (64.12%), Postives = 96/131 (73.28%), Query Frame = 3
Query:   36 AQAPDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            A A  + A  ANG A KKG              YVG+HS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   21 AAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHSTGFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEYARF 151          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_MAGGR (ATP-dependent RNA helicase SUB2 OS=Magnaporthe grisea GN=SUB2 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.459e-40
Identity = 85/122 (69.67%), Postives = 96/122 (78.69%), Query Frame = 3
Query:   36 AQAPDSVATK----ANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            A A DS   K    A G   KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQA+LG D+ICQAKSG+GKTAVFVL+TLQQ EP  G+ + LV+CHTRELA+QI +E+ RF
Sbjct:   22 APAADSNGKKGELAAGGNVDKKGSYVGIHSTGFRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRF 143          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.459e-40
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 3
Query:   75 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P  G+++ LV+CHTRELAYQI +E+ RF
Sbjct:   36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRELAYQIRNEYARF 140          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.459e-40
Identity = 84/129 (65.12%), Postives = 96/129 (74.42%), Query Frame = 3
Query:   42 APDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            A  + A  ANG+AAKKG              YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   21 AATTAAPAANGDAAKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARF 149          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.518e-40
Identity = 84/121 (69.42%), Postives = 96/121 (79.34%), Query Frame = 3
Query:   42 APDSVATKANGEAA-----KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            AP S   K +  AA     KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQA+LG D+ICQAKSG+GKTAVFVL+TLQQ EP  G+ + LV+CHTRELA+QI +E+ RF
Sbjct:   21 APASNGKKGDAAAAAQNVDKKGSYVGIHSTGFRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRF 141          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
SUB2_YARLI2.396e-4170.80ATP-dependent RNA helicase SUB2 OS=Yarrowia lipoly... [more]
SUB2_DEBHA3.129e-4171.19ATP-dependent RNA helicase SUB2 OS=Debaryomyces ha... [more]
SUB2_PICST4.086e-4177.14ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]
UAP56_CAEEL5.337e-4176.64Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
UAP56_DROME6.970e-4174.77ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
SUB2_COCIM2.649e-4064.12ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_MAGGR3.459e-4069.67ATP-dependent RNA helicase SUB2 OS=Magnaporthe gri... [more]
SUB2_LODEL3.459e-4076.19ATP-dependent RNA helicase SUB2 OS=Lodderomyces el... [more]
SUB2_ASPOR3.459e-4065.12ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_CHAGB4.518e-4069.42ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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