EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            F+D  +  +L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ    NP     L+L  TRELA+QI   FE
Sbjct:   54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLILAPTRELAFQISKSFE 141          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 44/91 (48.35%), Postives = 51/91 (56.04%), Query Frame = 3
Query:   93 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            Y  +H S F D  L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    +  ALVL  TRELA QI
Sbjct:   36 YDEVHES-FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQI 125          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 374
            F+DF L  +L++AI   GFE  + +Q + IP  +   DVI QA++G GKTA F +  +++  P    + A+V+  TRELA Q+  E
Sbjct:    5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEE 90          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 374
            F+DF L  +L +AI   GFE  + +Q + IP  +   DVI QA++G GKTA F +  +++  P    + A+V+  TRELA Q+  E
Sbjct:    5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEE 90          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            + F +  +K +LLR +   GFE PS +Q   +   I G DVI QA+SG GKT++  L+  Q  +    +V AL+L  TRELA Q
Sbjct:   18 ASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQ 101          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 44/91 (48.35%), Postives = 51/91 (56.04%), Query Frame = 3
Query:   93 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            Y  +H S F D  L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    +  ALVL  TRELA QI
Sbjct:   36 YDEVHES-FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVECQALVLAPTRELAQQI 125          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 377
            +GF +  L   L+      G + P+ VQ  CIP  + G D +  AK+G GKTA FVL  LQ+   +P  +  LVL  TRELAYQI  +F
Sbjct:    2 AGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQF 90          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 377
            +GF +  L   L+      G + P+ VQ  CIP  + G D +  AK+G GKTA FVL  LQ+   +P  +  LVL  TRELAYQI  +F
Sbjct:    2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQF 90          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 374
            FR+  L   LL+++   GFE  + +Q E IP A+ G D+I QA++G GKTA F L  L + + +   V  +V+  TRELA Q+  E
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEE 89          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 374
            FR+  L   LL+++   GFE  + +Q E IP A+ G D+I QA++G GKTA F L  L + + +   V  +V+  TRELA Q+  E
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEE 89          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
RRP3_ASPFU1.515e-1142.05ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
IF4A_WHEAT1.515e-1148.35Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
CSHA_BACSU1.515e-1139.53DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACLD1.515e-1139.53DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
IF4A3_NICPL1.978e-1141.67Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
IF4A1_ORYSJ1.978e-1148.35Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
DDX49_MOUSE1.978e-1142.70Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DDX49_HUMAN1.978e-1142.70Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
CSHA_BACHK1.978e-1140.70DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ1.978e-1140.70DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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