EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 374
            FR+  L   LL+++   GFE  + +Q E IP A+ G D+I QA++G GKTA F L  L + + +   V  +V+  TRELA Q+  E
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEE 89          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 374
            FR+  L   LL+++   GFE  + +Q E IP A+ G D+I QA++G GKTA F L  L + + +   V  +V+  TRELA Q+  E
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEE 89          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 374
            FR+  L   LL+++   GFE  + +Q E IP A+ G D+I QA++G GKTA F L  L + + +   V  +V+  TRELA Q+  E
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEE 89          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 374
            FR+  L   LL+++   GFE  + +Q E IP A+ G D+I QA++G GKTA F L  L + + +   V  +V+  TRELA Q+  E
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEE 89          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.583e-11
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            S F +  L PELL AI    F  P+ +Q E IP A+ G D+I  A++G GKTA F +  LQ           LVL   RELAYQI   F+
Sbjct:   71 STFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKETFD 160          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.583e-11
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            S  F++  +  +L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P     LVL  TRELAYQI   FE
Sbjct:   47 SKTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFE 137          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH26_ORYSJ (DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa subsp. japonica GN=Os01g0618500 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 3
Query:   90 GYVGIHSSG--FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ--QTEPNPGQVTALVLCHTRELAYQICHE 374
            G VG H S   F    + P  L+AI D+G+E  ++VQ   +P  + G DV+ +AK+G GKT  F+L  ++   T P    +  LV+C TRELA Q+  E
Sbjct:   65 GVVGSHLSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLLPAIELLSTLPRSPSINLLVICPTRELANQVAAE 163          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 38/83 (45.78%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK ELLR I   GF  PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ  +        L+L  TRELA QI
Sbjct:   24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQI 106          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 44/91 (48.35%), Postives = 51/91 (56.04%), Query Frame = 3
Query:   93 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            Y  +H S F    L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ + +  Q  ALVL  TRELA QI
Sbjct:   34 YDDVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQI 123          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY---QICHEFER 383
            F DF L  +LL  I + G+E PS +Q   I  A+ G D++ +AK+G GKT  + +  +++ +P    + A+V+  TRELA    QIC E  +
Sbjct:   45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
CSHA_BACCR1.978e-1140.70DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC11.978e-1140.70DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN1.978e-1140.70DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAH1.978e-1140.70DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
RRP3_PICST2.583e-1143.33ATP-dependent rRNA helicase RRP3 OS=Pichia stipiti... [more]
RRP3_ASPNC2.583e-1141.76ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]
RH26_ORYSJ4.407e-1139.39DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sa... [more]
IF4A_KLULA4.407e-1145.78ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A1_ARATH4.407e-1148.35Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
CGH1_CAEEL4.407e-1136.96ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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