EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L   LLR +   GFE PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ+ + +     AL+L  TRELA QI
Sbjct:   24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 106          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L   LLR +   GFE PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ+ + +     AL+L  TRELA QI
Sbjct:   24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 106          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  L  +LLR +   GF  PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ+ +P      AL+L  TRELA QI
Sbjct:   25 FDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DBP9_EMENI (ATP-dependent RNA helicase dbp9 OS=Emericella nidulans GN=dbp9 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 3
Query:   42 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTEPNPGQVTALVLCHTRELAYQI 365
            A D  +T+AN     KG        F    L P L +A+V   F  P+ VQ + IP A+ G D++ +AK+G GKTA +VL  LQ        +P+    T L+L  TRELA Q+
Sbjct:    7 ANDVPSTEANEAEEVKG--ADRDEDFETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAIDPSMKATTGLILVPTRELAEQV 118          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DBP9_AJECN (ATP-dependent RNA helicase DBP9 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP9 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  102 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL----STLQQTEPNPG--QVTALVLCHTRELAYQI 365
            I +  F    L P LL+A+    F  P+ +Q E IP A+ G DV+ +AK+G GKTA ++L    S LQQ    P    ++AL+L  TRELA Q+
Sbjct:   21 ITAHSFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQSILQQKRNTPAHKSISALILVPTRELAEQV 114          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            F+D  +  +L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P     L+L  TRELA+QI   FE
Sbjct:   54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISKSFE 141          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 3
Query:   96 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQI 365
            V  H+  F +  L   LLRA    G++ P+ +Q  CIP A+ G D+   A +G GKTA F L TL++    P +V A   L+L  TRELA QI
Sbjct:  162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQI 254          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH25_ORYSJ (DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica GN=Os01g0618400 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 37/123 (30.08%), Postives = 63/123 (51.22%), Query Frame = 3
Query:   39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--------QVTALVLCHTRELAYQICHEFER 383
            +AP+  A K+  E+       +  + F    + P  L+A+ D+G+E  ++VQ   +P  + G DV+ +AK+G GKT  F+L  ++     P          +  LV+C TRELA Q+  E ++
Sbjct:  102 EAPEFDAAKSGDESGGVDGSYLSDTRFDQCTISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKK 224          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK ELL+ +   GFE PS +Q   I   +   DV+ QA+SG GKT  F ++ LQ+ + +     AL+L  TRELA QI
Sbjct:   25 FDDMNLKDELLKGVYGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAALQRIDSSIKAPQALILAPTRELALQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = 3
Query:   48 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            DS+    N E        +H   F +  LK  LLR I   GF  PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ+ + +     AL+L  TRELA QI
Sbjct:    3 DSITNPENSEIQTNYDKIVHK--FDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDESIKAPQALILAPTRELALQI 106          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
IF4A_YEAST5.755e-1144.58ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS75.755e-1144.58ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_CANGA5.755e-1144.58ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
DBP9_EMENI5.755e-1137.72ATP-dependent RNA helicase dbp9 OS=Emericella nidu... [more]
DBP9_AJECN5.755e-1141.49ATP-dependent RNA helicase DBP9 OS=Ajellomyces cap... [more]
RRP3_NEOFI7.517e-1140.91ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RH28_ARATH7.517e-1141.94DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]
RH25_ORYSJ7.517e-1130.08DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sa... [more]
IF4A_VANPO7.517e-1143.37ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
IF4A_ASHGO7.517e-1139.62ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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