EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:155..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   48 DSVATKANGEAAKKGYVGIHS--SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 380
            D+ A +++ EA  +    + +    F D  ++ EL  A  + G++  + +Q E IP A+ G D+I  A++G GKTA FVL  LQ     P     L++  TRELAYQI  + +
Sbjct:   92 DAEAEQSDEEAEAQAAAAVEAPKKTFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLIMAPTRELAYQISQQVD 204          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH38_ORYSJ (DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica GN=Os03g0158200 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 3
Query:   90 GYVGIHSSGFRDFLLKPELLRAIVDS-GFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            G V   ++ F D  L PELL+ + D  GF  PS++Q   +P  +     D+I QA +G GKT  FVL  L + +PN     A+ +C TRELA Q
Sbjct:   93 GTVYESAAAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQ 186          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 42/113 (37.17%), Postives = 58/113 (51.33%), Query Frame = 3
Query:   39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 377
            +AP +  T+  G+ A    V    S F +  L   L+      G   P+ VQ  CIP+A+ G DV+  A++G GKTA F L  L +   +P  V AL L  TRELA Q+  +F
Sbjct:   56 EAPAAAVTEHAGDDAAAAAV---PSTFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQF 165          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:   66 ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            A+G+     Y  ++ S F    L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    Q  ALVL  TRELA QI
Sbjct:   26 ADGKDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 124          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 44/91 (48.35%), Postives = 50/91 (54.95%), Query Frame = 3
Query:   93 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            Y  +H S F    L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    Q  ALVL  TRELA QI
Sbjct:   34 YDEVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQI 123          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 36/112 (32.14%), Postives = 62/112 (55.36%), Query Frame = 3
Query:   42 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQIC 368
            A D     A+ E A      +H++ F+   L   +L+ +   G+  PS +Q  CIP A+LG D++  A +G GKTA +++  +++    P ++++   +VL  TRELA Q+C
Sbjct:  236 AEDMAEFYADEEEATTAKKQLHTT-FQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVC 346          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DBP9_ASPCL (ATP-dependent RNA helicase dbp9 OS=Aspergillus clavatus GN=dbp9 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 3
Query:   57 ATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            A  A G+ AK       ++ F +  L P L +A++   F  P+ VQ + IP A+ G D++ +AK+G GKTA +VL  LQ        +P+    T L+L  TRELA Q+     +F
Sbjct:   13 AEVAEGKEAKDA----DNTDFENLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSVITKF 124          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
RRP3_PHANO9.817e-1134.51ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
RH38_ORYSJ9.817e-1140.43DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sa... [more]
RH36_ORYSJ9.817e-1137.17DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
IF4A8_TOBAC9.817e-1145.00Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A2_ARATH9.817e-1148.35Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]
DRS1_DEBHA9.817e-1132.14ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
DBP9_ASPCL9.817e-1135.34ATP-dependent RNA helicase dbp9 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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