EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.741e-37
Identity = 82/126 (65.08%), Postives = 98/126 (77.78%), Query Frame = 3
Query:   39 QAPDSVATKA--NGEAA-------KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            Q  ++ AT+   NGE A       KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +VLC+ RELAYQI +E+ RF
Sbjct:   20 QVDNTKATEVAGNGEEAADGKDGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRNEYLRF 145          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_ASPTN (ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sub2 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.580e-37
Identity = 80/118 (67.80%), Postives = 91/118 (77.12%), Query Frame = 3
Query:   36 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            A A     T   G + KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEV   CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   32 APAKTGDLTVTGGRSDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEV---CIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARF 146          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.676e-37
Identity = 81/113 (71.68%), Postives = 92/113 (81.42%), Query Frame = 3
Query:   57 ATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE--PNPGQVTALVLCHTRELAYQICHEFERF 386
            A  A+GE  KKG YVGIHS+GFRDFLLK EL+RAI D GFEHPSEVQ   IPQAILG DV+CQAKSG+GKTAVFVL+TLQQ +  P PG  + LV+CHTRELAYQI +E+ RF
Sbjct:   35 APDASGE--KKGSYVGIHSTGFRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHTRELAYQIRNEYNRF 145          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.360e-36
Identity = 74/102 (72.55%), Postives = 87/102 (85.29%), Query Frame = 3
Query:   84 KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V  +V+C+ RELAYQI +E+ RF
Sbjct:   52 KKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRF 153          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.360e-36
Identity = 74/102 (72.55%), Postives = 87/102 (85.29%), Query Frame = 3
Query:   84 KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V  +V+C+ RELAYQI +E+ RF
Sbjct:   52 KKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRF 153          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_KLULA (ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.360e-36
Identity = 79/123 (64.23%), Postives = 95/123 (77.24%), Query Frame = 3
Query:   48 DSVATKANGE---------AAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            D+ AT+ N E         + KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P  G+V+ +VLC+ RELAYQI +E+ RF
Sbjct:   22 DNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRF 144          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            +GF DF LK ELL  I ++GFE+PS +Q E IP A+ G D++ +AK+G GKTA FV+  LQQ  P   ++ AL++  TRELA Q
Sbjct:   28 TGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQ 111          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.414e-17
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +P   ++ AL++  TRELA Q
Sbjct:   48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQ 129          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.414e-17
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +P   ++ AL++  TRELA Q
Sbjct:   48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQ 129          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.414e-17
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +P   ++ AL++  TRELA Q
Sbjct:   38 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQ 119          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
SUB2_ASHGO2.741e-3765.08ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii... [more]
SUB2_ASPTN3.580e-3767.80ATP-dependent RNA helicase sub2 OS=Aspergillus ter... [more]
SUB2_PHANO4.676e-3771.68ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria n... [more]
SUB2_YEAST1.360e-3672.55ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_YEAS71.360e-3672.55ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_KLULA1.360e-3664.23ATP-dependent RNA helicase SUB2 OS=Kluyveromyces l... [more]
DHH1_YARLI1.279e-1851.19ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DHH1_YEAST1.414e-1751.22ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS71.414e-1751.22ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_KLULA1.414e-1751.22ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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